当前解析结果
SmilChr08G001312| 统一新 Gene ID | SmilChr08G001312 |
|---|---|
| 名称 | SmilChr08G001312 |
| 描述 | wax ester synthase/diacylglycerol acyltransferase 11-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 10455390 - 10458890 / - |
| NCBI Gene ID | LOC131000845 |
|---|---|
| GeneID | 131000845 |
| locus_tag | - |
| NCBI Name | LOC131000845 |
| 原始查询 | SmilChr08G001312 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wax ester synthase/diacylglycerol acyltransferase 11-like |
| 产物 | wax ester synthase/diacylglycerol acyltransferase 11-like |
| Arabidopsis | AT5G53390 (FOP1)O-acyltransferase (WSD1-like) family protein [Source:NCBI gene (formerly Entrezgene);Acc:835420] identity=32.6; qcov=1.02; evalue=9.33e-80; confidence=low |
| Rice | Os01g0681000- identity=34.4; qcov=1.05; evalue=8.22e-89; confidence=low |
| GO | GO:0004144 (diacylglycerol O-acyltransferase activity); GO:0005886 (plasma membrane); GO:0019432 (triglyceride biosynthetic process); GO:0047196 (long-chain-alcohol O-fatty-acyltransferase activity) |
| KEGG | - |
| Pfam | PF03007 (WS_DGAT_cat); PF06974 (WS_DGAT_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000845 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057782947.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057782947.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057782947.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057782947.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057782947.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:10455581 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | B137,C78 |
Chr8:10455581 |
GA |
G |
1bp_deletion | CDS_variant | 2 | B137,C78 |
Chr8:10455824 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr8:10455828 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B118,B56,B96,C49,C85 |
Chr8:10455849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B127,B97,C9 |
Chr8:10456193 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B32,C27,C57,C77,C84 |
Chr8:10457494 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B111,B121,B79,C58 |
Chr8:10457577 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C36 |
Chr8:10457577 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C36 |
Chr8:10457622 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B111,B97,C7,C9 |
Chr8:10457640 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B111,B97,C7,C9 |
Chr8:10457651 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057782947.1PF03007
WS_DGAT_cat 31-246 aa
PF06974
WS_DGAT_C 303-448 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782947.1 |
Pfam | PF03007 |
WS_DGAT_cat | Domain | 31 | 246 | 5.5e-12 | 46.7 | Wax ester synthase/diacylglycerol acyltransferase catalytic domain |
XP_057782947.1 |
Pfam | PF06974 |
WS_DGAT_C | Domain | 303 | 448 | 4.8e-41 | 140.9 | WS/DGAT C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。