当前解析结果
SmilChr08G001314| 统一新 Gene ID | SmilChr08G001314 |
|---|---|
| 名称 | SmilChr08G001314 |
| 描述 | caffeoyl-CoA O-methyltransferase 5-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 10468061 - 10474952 / - |
| NCBI Gene ID | LOC131000893 |
|---|---|
| GeneID | 131000893 |
| locus_tag | - |
| NCBI Name | LOC131000893 |
| 原始查询 | SmilChr08G001314 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | caffeoyl-CoA O-methyltransferase 5-like |
| 产物 | caffeoyl-CoA O-methyltransferase 5-like |
| Arabidopsis | AT4G34050 (CCoAOMT1)S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829551] identity=82.7; qcov=0.98; evalue=7.56e-158; confidence=high |
| Rice | Os06g0165800 (ROMT-16)- identity=79.6; qcov=0.968; evalue=2.43e-151; confidence=high |
| GO | GO:0008171 (O-methyltransferase activity); GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity) |
| KEGG | smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00941 (Flavonoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00945 (Stilbenoid, diarylheptanoid and gingerol biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01596 (Methyltransf_3); PF13578 (Methyltransf_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000893 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057783016.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057783016.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057783016.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057783016.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057783016.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:10468601 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr8:10474728 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057783016.1PF01596
Methyltransf_3 36-247 aa
PF13578
Methyltransf_24 85-191 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783016.1 |
Pfam | PF01596 |
Methyltransf_3 | Domain | 36 | 247 | 6e-96 | 320.3 | O-methyltransferase |
XP_057783016.1 |
Pfam | PF13578 |
Methyltransf_24 | Domain | 85 | 191 | 3e-09 | 38.4 | Methyltransferase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。