Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001319`

染色体: Chr08 坐标: 10562672-10567911 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001319`
名称	SmilChr08G001319
描述	uncharacterized SmilChr08G001319
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	10562672 - 10567911 / `-`

ID 对照

NCBI Gene ID	`LOC131000838`
GeneID	`131000838`
locus_tag	`-`
NCBI Name	`LOC131000838`
原始查询	`SmilChr08G001319`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os08g0230500; species=rice; confidence=high
产物	hit=Os08g0230500; species=rice; confidence=high
Arabidopsis	`AT2G15560` (AT2G15560) Putative endonuclease or glycosyl hydrolase [Source:NCBI gene (formerly Entrezgene);Acc:816049] identity=52.4; qcov=1.01; evalue=3.83e-161; confidence=high
Rice	`Os08g0230500` - identity=53.9; qcov=1.03; evalue=2.46e-168; confidence=high
GO	GO:0004540 (RNA nuclease activity); GO:0005777 (peroxisome); GO:0010468 (regulation of gene expression)
KEGG	-
Pfam	PF01936 (NYN); PF12872 (OST-HTH)
InterPro	-
eggNOG	-
NR	GeneID:131000838

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782926.1`
2	Cytoplasm	细胞质	0.60000	`XP_057782926.1`
3	Cytosol	细胞质基质	0.60000	`XP_057782926.1`
4	Chromosome	染色体	0.00000	`XP_057782926.1`
5	Centromere	着丝粒	0.00000	`XP_057782926.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:10565186`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr8:10565543`	`CT`	`C`	1bp_deletion	frameshift_variant	11	A13,B139,B36,B64,B77,B88,C19,C47,C56,C84,C9
`Chr8:10565808`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B111,B121,B79
`Chr8:10565836`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,C19,C82
`Chr8:10565907`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr8:10566130`	`ACC`	`A`	2bp_deletion	frameshift_variant	6	A18,B30,B47,B91,C52,D9
`Chr8:10566489`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782926.1

529 aa

264

529

NYN

OST-HTH

PF01936 NYN 46-184 aa PF12872 OST-HTH 310-377 aa PF12872 OST-HTH 456-519 aa

XP_057782927.1

529 aa

264

529

NYN

OST-HTH

PF01936 NYN 46-184 aa PF12872 OST-HTH 310-377 aa PF12872 OST-HTH 456-519 aa

XP_057782928.1

529 aa

264

529

NYN

OST-HTH

PF01936 NYN 46-184 aa PF12872 OST-HTH 310-377 aa PF12872 OST-HTH 456-519 aa

XP_057782929.1

478 aa

239

478

NYN

OST-HTH

PF01936 NYN 1-133 aa PF12872 OST-HTH 259-326 aa PF12872 OST-HTH 405-468 aa

XP_057782930.1

478 aa

239

478

NYN

OST-HTH

PF01936 NYN 1-133 aa PF12872 OST-HTH 259-326 aa PF12872 OST-HTH 405-468 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782926.1`	Pfam	`PF01936`	NYN	Domain	46	184	1.3e-25	91.3	NYN domain
`XP_057782926.1`	Pfam	`PF12872`	OST-HTH	Domain	310	377	2.3e-19	69.7	OST-HTH/LOTUS domain
`XP_057782926.1`	Pfam	`PF12872`	OST-HTH	Domain	456	519	2.3e-19	69.7	OST-HTH/LOTUS domain
`XP_057782927.1`	Pfam	`PF01936`	NYN	Domain	46	184	1.3e-25	91.3	NYN domain
`XP_057782927.1`	Pfam	`PF12872`	OST-HTH	Domain	310	377	2.3e-19	69.7	OST-HTH/LOTUS domain
`XP_057782927.1`	Pfam	`PF12872`	OST-HTH	Domain	456	519	2.3e-19	69.7	OST-HTH/LOTUS domain
`XP_057782928.1`	Pfam	`PF01936`	NYN	Domain	46	184	1.3e-25	91.3	NYN domain
`XP_057782928.1`	Pfam	`PF12872`	OST-HTH	Domain	310	377	2.3e-19	69.7	OST-HTH/LOTUS domain
`XP_057782928.1`	Pfam	`PF12872`	OST-HTH	Domain	456	519	2.3e-19	69.7	OST-HTH/LOTUS domain
`XP_057782929.1`	Pfam	`PF01936`	NYN	Domain	1	133	9e-21	75.6	NYN domain
`XP_057782929.1`	Pfam	`PF12872`	OST-HTH	Domain	259	326	1.7e-19	70.1	OST-HTH/LOTUS domain
`XP_057782929.1`	Pfam	`PF12872`	OST-HTH	Domain	405	468	1.7e-19	70.1	OST-HTH/LOTUS domain
`XP_057782930.1`	Pfam	`PF01936`	NYN	Domain	1	133	9e-21	75.6	NYN domain
`XP_057782930.1`	Pfam	`PF12872`	OST-HTH	Domain	259	326	1.7e-19	70.1	OST-HTH/LOTUS domain
`XP_057782930.1`	Pfam	`PF12872`	OST-HTH	Domain	405	468	1.7e-19	70.1	OST-HTH/LOTUS domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057926946.1
ATTACGGAATTTATGAGAAATATATTATAGCTCACTAATTAAGAAATAAGTATCATCAATTTGATAAAAACCCATTTCTTAAGTTGCAAATAAGGCGTTGCTAACCTAGAAAGTTGAGGTCAGCCTTCCTCCACCGGCCTCCCATAAAGGGGAAAAAACAATTGAACTCTATGTTTGCATCCAAATAAATCTCGCCATAACTGCGATATAATCCAACAACTACTGTTAGATCATCTCTTTTTTAATTTTATTTTGGTATA...

XM_057926947.1
ATTACGGAATTTATGAGAAATATATTATAGCTCACTAATTAAGAAATAAGTATCATCAATTTGATAAAAACCCATTTCTTAAGTTGCAAATAAGGCGTTGCTAACCTAGAAAGTTGAGGTCAGCCTTCCTCCACCGGCCTCCCATAAAGGGGAAAAAACAATTGAACTCTATGTTTGCATCCAAATAAATCTCGCCATAACTGCGATATAATCCAACAACTACTGTTAGATCATCTCTTTTTTAATTTTATTTTGGTATA...

CDS

5 records

下载 CDS FASTA

LOC131000838
ATGTCGAGCTCAAATACATCTACATTGCTGTTTCCATCAGAATACTCAGGACATGGCCCAAAGCAATCAGAAAGCTCAAATGGAAACCGATATCGACCTTTGTTGCATCAAAGTTGGTGCTCCTCTCAGGGTCCTGTTGCTATTCTTTGGGACATGGAGAACTGTCCCGTGCCAAGTGATGTGCGGTCTGAAGATGTGGCTGGTAACATTAGGATGGCCCTGCGAGTTCATCCTATAATTGATGGAGCTGTAACAATGTT...

Protein

5 records

下载 Protein FASTA

XP_057782926.1
MSSSNTSTLLFPSEYSGHGPKQSESSNGNRYRPLLHQSWCSSQGPVAILWDMENCPVPSDVRSEDVAGNIRMALRVHPIIDGAVTMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDASDKAILIDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILAIPSRVGVSSALSNAGRFVWDWPNVARGEGFMPPAKAMIPSRGVAGDLAGLLVGCHINNYMDGENEEESIVYRGISKGYCSTRDLSFVSRSA...

XP_057782927.1
MSSSNTSTLLFPSEYSGHGPKQSESSNGNRYRPLLHQSWCSSQGPVAILWDMENCPVPSDVRSEDVAGNIRMALRVHPIIDGAVTMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDASDKAILIDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILAIPSRVGVSSALSNAGRFVWDWPNVARGEGFMPPAKAMIPSRGVAGDLAGLLVGCHINNYMDGENEEESIVYRGISKGYCSTRDLSFVSRSA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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