Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G001325

染色体: Chr08 坐标: 10600939-10602553 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G001325
名称SmilChr08G001325
描述uncharacterized SmilChr08G001325
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向10600939 - 10602553 / -

ID 对照

NCBI Gene IDLOC131000906
GeneID131000906
locus_tag-
NCBI NameLOC131000906
原始查询SmilChr08G001325

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述hit=Os01g0142200; species=rice; confidence=high
产物hit=Os01g0142200; species=rice; confidence=high
ArabidopsisAT4G34412 (AT4G34412)
EKC/KEOPS complex subunit tprkb-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829592]
identity=70.3; qcov=1.01; evalue=3.47e-83; confidence=high
RiceOs01g0142200
-
identity=72.7; qcov=1.01; evalue=1.6e-87; confidence=high
GOGO:0000408 (EKC/KEOPS complex); GO:0000722 (telomere maintenance via recombination); GO:0002949 (tRNA threonylcarbamoyladenosine modification); GO:0005634 (nucleus); GO:0005829 (cytosol)
KEGG-
PfamPF08617 (CGI-121)
InterPro-
eggNOG-
NRGeneID:131000906

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 0.80000 XP_057783032.1
2 Cytoplasm 细胞质 0.60000 XP_057783030.1
3 Cytosol 细胞质基质 0.20000 XP_057783030.1
4 Mitochondrion 线粒体 0.20000 XP_057783030.1
5 Nucleus 细胞核 0.00000 XP_057783030.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:10601045 G A EMS_canonical_SNV CDS_variant 3 B140,C19,C82
Chr8:10601248 C T EMS_canonical_SNV CDS_variant 1 B49
Chr8:10601275 C T EMS_canonical_SNV CDS_variant 1 C15
Chr8:10602414 G A EMS_canonical_SNV CDS_variant 1 C52

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057783030.1
207 aa
N
1
104
207
CGI-121
C
PF08617 CGI-121 16-144 aa
XP_057783031.1
172 aa
N
1
86
172
CGI-121
C
PF08617 CGI-121 16-170 aa
XP_057783032.1
171 aa
N
1
86
171
CGI-121
C
PF08617 CGI-121 16-169 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057783030.1 Pfam PF08617 CGI-121 Domain 16 144 7.9e-35 120.9 Kinase binding protein CGI-121
XP_057783031.1 Pfam PF08617 CGI-121 Domain 16 170 5.5e-40 137.7 Kinase binding protein CGI-121
XP_057783032.1 Pfam PF08617 CGI-121 Domain 16 169 5.4e-42 144.2 Kinase binding protein CGI-121

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057927049.1
CCTCACTCTACAAAACCCTAGCACAAAAGTTACCAAATTTTGCGGAACTCGTACCCTAAAACCCCAAATCTCCATAATTCTTCCTCCCATTCTTTTTAAACGCAGAAATGAAGAGCTTCGAGATCGATGGTACCACTCTCTCTCTCGCTCTCTTCGTCGACGTTACCAATTCCAAAGAGCTTCTGGAGTTGATGCAAGCAGGGACTTTGGAACCAGAAGTAGCATTTCTCAATGCTTCACTTATACCAGATGTTTTCCCT...
XM_057927047.1
AAAACCCTAGCACAAAAGTTACCAAATTTTGCGGAACTCGTACCCTAAAACCCCAAATCTCCATAATTCTTCCTCCCATTCTTTTTAAACGCAGAAATGAAGAGCTTCGAGATCGATGGTACCACTCTCTCTCTCGCTCTCTTCGTCGACGTTACCAATTCCAAAGAGCTTCTGGAGTTGATGCAAGCAGGGACTTTGGAACCAGAAGTAGCATTTCTCAATGCTTCACTTATACCAGATGTTTTCCCTGTTCTTGCTGC...

CDS

3 records

下载 CDS FASTA
LOC131000906
ATGAAGAGCTTCGAGATCGATGGTACCACTCTCTCTCTCGCTCTCTTCGTCGACGTTACCAATTCCAAAGAGCTTCTGGAGTTGATGCAAGCAGGGACTTTGGAACCAGAAGTAGCATTTCTCAATGCTTCACTTATACCAGATGTTTTCCCTGTTCTTGCTGCAGCAAACAAGACGCTTGTAGCAAAAATACGAGACTCACTGACAACCCGCACTCTTCATTCGGAGCTTGTCTACAACTACTCAGGCTCCAAACATAT...
LOC131000906
ATGAAGAGCTTCGAGATCGATGGTACCACTCTCTCTCTCGCTCTCTTCGTCGACGTTACCAATTCCAAAGAGCTTCTGGAGTTGATGCAAGCAGGGACTTTGGAACCAGAAGTAGCATTTCTCAATGCTTCACTTATACCAGATGTTTTCCCTGTTCTTGCTGCAGCAAACAAGACGCTTGTAGCAAAAATACGAGACTCACTGACAACCCGCACTCTTCATTCGGAGCTTGTCTACAACTACTCAGGCTCCAAACATAT...

Protein

3 records

下载 Protein FASTA
XP_057783030.1
MKSFEIDGTTLSLALFVDVTNSKELLELMQAGTLEPEVAFLNASLIPDVFPVLAAANKTLVAKIRDSLTTRTLHSELVYNYSGSKHISESLKRCGISDSTTYILAARFGATADEMTAIKGLIKGTEIGLEELETRANQAQIQKVCSSSSSSIRFKYVVAGVDVCFVDLSTTKYQRRSWGYLRWRMLLRAGFLREMLCNKSAQLIICL
XP_057783031.1
MKSFEIDGTTLSLALFVDVTNSKELLELMQAGTLEPEVAFLNASLIPDVFPVLAAANKTLVAKIRDSLTTRTLHSELVYNYSGSKHQISESLKRCGISDSTTYILAARFGATADEMTAIKGLIKGTEIGLEELETRANQAQIQKHYKISAPELGISSVADAITCRISARDAL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器