Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001345`

染色体: Chr08 坐标: 10754831-10759411 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001345`
名称	SmilChr08G001345
描述	probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	10754831 - 10759411 / `-`

ID 对照

NCBI Gene ID	`LOC131000855`
GeneID	`131000855`
locus_tag	`-`
NCBI Name	`LOC131000855`
原始查询	`SmilChr08G001345`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic
产物	probable N-acetyl-gamma-glutamyl-phosphate reductase%2C chloroplastic
Arabidopsis	`AT2G19940` (AT2G19940) Putative N-acetyl-gamma-glutamyl-phosphate reductase [Source:NCBI gene (formerly Entrezgene);Acc:816513] identity=72.6; qcov=0.945; evalue=0; confidence=high
Rice	`Os03g0617900` - identity=72.1; qcov=0.965; evalue=0; confidence=high
GO	GO:0003942 (N-acetyl-gamma-glutamyl-phosphate reductase activity); GO:0006526 (L-arginine biosynthetic process); GO:0046983 (protein dimerization activity); GO:0051287 (NAD binding); GO:0070401 (NADP+ binding)
KEGG	smil00220 (Arginine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF01118 (Semialdhyde_dh); PF02774 (Semialdhyde_dhC); PF22698 (Semialdhyde_dhC_1)
InterPro	-
eggNOG	-
NR	GeneID:131000855

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057782958.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057782958.1`
3	Nucleus	细胞核	0.00000	`XP_057782958.1`
4	Chromosome	染色体	0.00000	`XP_057782958.1`
5	Centromere	着丝粒	0.00000	`XP_057782958.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:10756232`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B115
`Chr8:10758297`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr8:10758307`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B109,B24,B25
`Chr8:10758322`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr8:10758337`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A15,B21

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782958.1

401 aa

200

401

Semialdhyde_dh

Semialdhyde_dhC_1

Semialdhyde_dhC

PF01118 Semialdhyde_dh 60-196 aa PF22698 Semialdhyde_dhC_1 205-369 aa PF02774 Semialdhyde_dhC 214-372 aa

XP_057782959.1

401 aa

200

401

Semialdhyde_dh

Semialdhyde_dhC_1

Semialdhyde_dhC

PF01118 Semialdhyde_dh 60-196 aa PF22698 Semialdhyde_dhC_1 205-369 aa PF02774 Semialdhyde_dhC 214-372 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782958.1`	Pfam	`PF01118`	Semialdhyde_dh	Domain	60	196	6.4e-28	98.3	Semialdehyde dehydrogenase, NAD binding domain
`XP_057782958.1`	Pfam	`PF22698`	Semialdhyde_dhC_1	Domain	205	369	8.7e-62	208.5	Semialdehyde dehydrogenase, dimerisation domain
`XP_057782958.1`	Pfam	`PF02774`	Semialdhyde_dhC	Domain	214	372	7.8e-22	79.0	Semialdehyde dehydrogenase, dimerisation domain
`XP_057782959.1`	Pfam	`PF01118`	Semialdhyde_dh	Domain	60	196	6.4e-28	98.3	Semialdehyde dehydrogenase, NAD binding domain
`XP_057782959.1`	Pfam	`PF22698`	Semialdhyde_dhC_1	Domain	205	369	8.7e-62	208.5	Semialdehyde dehydrogenase, dimerisation domain
`XP_057782959.1`	Pfam	`PF02774`	Semialdhyde_dhC	Domain	214	372	7.8e-22	79.0	Semialdehyde dehydrogenase, dimerisation domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926976.1
ATTTTAGTTTCCTCCAGTGCGTTCCCCACAATTCCACCCAATTTCAACAGGTATCACGCGACTTTTATTTGCTTAAATTGGTCGACCCCCAGAAGTCTGAGCACAACTTAACGGAAAGCTTCATCTTCACTTTCCACAGTTCTTCAAGTTGAAACCTTTCATTTCTCCCATATCTTTCAGTTTCTTATTTATTCACATCTTATTCGGAAAAGAGGATCGTGATAAGATGGGTTCTCTGGCTTCTCTGCATTCAATCAGTA...

XM_057926975.1
TTTTAGTTTCCTCCAGTGCGTTCCCCACAATTCCACCCAATTTCAACAGGTATCACGCGACTTTTATTTGCTTAAATTGGTCGACCCCCAGAAGTCTGAGCACAACTTAACGGAAAGCTTCATCTTCACTTTCCACAGTTCTTCAAGTTGAAACCTTTCATTTCTCCCATATCTTTCAGTTTCTTATTTATTCACATCTTATTCGGAAAAGAGGATCGTGATAAGATGGGTTCTCTGGCTTCTCTGCATTCAATCAGTAG...

CDS

2 records

下载 CDS FASTA

LOC131000855
ATGGGTTCTCTGGCTTCTCTGCATTCAATCAGTAGCGTTCGGGGCTGCTTCATTAAATACCATGATGAAGTCAAAAATTCAACGGTTAAGAAGTTCAGTGTTAGAACTTCTGTTGCTACATCAGCGCCACAGAAATTTCAGGCTGAAGAAAATAAAGCCAATAAACTGGAAAAGTTCCGAATTGGTGTGCTTGGGGCGAGTGGCTACACTGGTTCTGAGATAATTAGGTTGTTGTCAAATCATCCGAACTATCAAATAAC...

Protein

2 records

下载 Protein FASTA

XP_057782958.1
MGSLASLHSISSVRGCFIKYHDEVKNSTVKKFSVRTSVATSAPQKFQAEENKANKLEKFRIGVLGASGYTGSEIIRLLSNHPNYQITLMTADRKAGQSIGSVFPHLVKQDLPDMVAVKDADFSNVDAVFCCLPHGTTQEIIKSLPSSLKIVDLSADFRLRDSNEYEEWYGQPHRAQELQKEAVYGLTEISRPEIESARLVANPGCYPTSIQLPLIPLIKANLIQVKNIIIDSKSGVSGAGRGAKETNLYTEIAEGIHSYG...

XP_057782959.1
MGSLASLHSISSVRGCFIKYHDEVKNSTVKKFSVRTSVATSAPQKFQAEENKANKLEKFRIGVLGASGYTGSEIIRLLSNHPNYQITLMTADRKAGQSIGSVFPHLVKQDLPDMVAVKDADFSNVDAVFCCLPHGTTQEIIKSLPSSLKIVDLSADFRLRDSNEYEEWYGQPHRAQELQKEAVYGLTEISRPEIESARLVANPGCYPTSIQLPLIPLIKANLIQVKNIIIDSKSGVSGAGRGAKETNLYTEIAEGIHSYG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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