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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G001349

染色体: Chr08 坐标: 10793915-10798620 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G001349
名称SmilChr08G001349
描述pentatricopeptide repeat-containing protein At2g15630, mitochondrial
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向10793915 - 10798620 / -

ID 对照

NCBI Gene IDLOC131000829
GeneID131000829
locus_tag-
NCBI NameLOC131000829
原始查询SmilChr08G001349

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At2g15630, mitochondrial
产物pentatricopeptide repeat-containing protein At2g15630%2C mitochondrial
ArabidopsisAT1G49470 (AT1G49470)
transmembrane epididymal protein (DUF716) [Source:NCBI gene (formerly Entrezgene);Acc:841370]
identity=52.8; qcov=1.02; evalue=1.89e-93; confidence=high
RiceOs08g0462900
-
identity=43.4; qcov=1.01; evalue=1.47e-73; confidence=medium
GOGO:0005515 (protein binding); GO:0009507 (chloroplast)
KEGG-
PfamPF01535 (PPR); PF04819 (DUF716); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131000829

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057782914.1
2 Endosome 内体 0.80000 XP_057782916.1
3 Endosome membrane 内体膜 0.80000 XP_057782916.1
4 Golgi apparatus 高尔基体 0.40000 XP_057782916.1
5 Cell membrane 细胞膜 0.20000 XP_057782916.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:10794140 G A EMS_canonical_SNV CDS_variant 1 C34
Chr8:10794552 G A EMS_canonical_SNV CDS_variant 1 B13
Chr8:10794855 C T EMS_canonical_SNV CDS_variant 2 B140,C82
Chr8:10794982 G A EMS_canonical_SNV CDS_variant 1 C63
Chr8:10794988 AT A 1bp_deletion frameshift_variant 23 A15,B103,B109,B131,B24,B25,B26,B34,B35,B52,B58,B61,B94,C11,C27,C50,C51,C61,C69,C72,C77,C84,D9
Chr8:10796399 C T EMS_canonical_SNV CDS_variant 5 B112,B17,B73,C3,C40
Chr8:10797087 C T EMS_canonical_SNV CDS_variant 5 B112,B17,B73,C3,C40
Chr8:10797203 C T EMS_canonical_SNV CDS_variant 2 B140,C82
Chr8:10797376 C T EMS_canonical_SNV CDS_variant 2 A5,B80
Chr8:10797678 G A EMS_canonical_SNV CDS_variant 1 C82
Chr8:10797894 G A EMS_canonical_SNV CDS_variant 1 C16
Chr8:10797903 G A EMS_canonical_SNV CDS_variant 1 C16

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782914.1
645 aa
N
1
322
645
PPR
PPR
PPR_3
PPR_2
PPR
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_long
PPR_2
PPR
PPR_3
TPR_24
PPR_1
PPR
PPR_2
PPR_long
PPR
PPR_3
PPR_long
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
C
PF01535 PPR 155-182 aa PF01535 PPR 189-218 aa PF13812 PPR_3 212-264 aa PF13041 PPR_2 221-266 aa PF01535 PPR 223-253 aa PF23276 TPR_24 241-348 aa PF12854 PPR_1 252-283 aa PF13041 PPR_2 255-304 aa PF01535 PPR 258-288 aa PF13812 PPR_3 279-337 aa PF01535 PPR 293-322 aa PF12854 PPR_1 324-347 aa PF13041 PPR_2 325-372 aa PF01535 PPR 328-358 aa PF13812 PPR_3 328-372 aa PF17177 PPR_long 329-443 aa PF13041 PPR_2 360-409 aa PF01535 PPR 363-393 aa PF13812 PPR_3 384-443 aa PF23276 TPR_24 388-489 aa PF12854 PPR_1 391-424 aa PF01535 PPR 398-428 aa PF13041 PPR_2 402-442 aa PF17177 PPR_long 416-526 aa PF01535 PPR 433-462 aa PF13812 PPR_3 454-512 aa PF17177 PPR_long 454-545 aa PF12854 PPR_1 461-494 aa PF13041 PPR_2 465-510 aa PF01535 PPR 468-496 aa PF12854 PPR_1 497-529 aa PF13041 PPR_2 500-544 aa PF01535 PPR 503-533 aa PF13812 PPR_3 523-580 aa PF12854 PPR_1 531-563 aa PF13041 PPR_2 535-584 aa PF01535 PPR 538-568 aa
XP_057782915.1
645 aa
N
1
322
645
PPR
PPR
PPR_3
PPR_2
PPR
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_long
PPR_2
PPR
PPR_3
TPR_24
PPR_1
PPR
PPR_2
PPR_long
PPR
PPR_3
PPR_long
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
C
PF01535 PPR 155-182 aa PF01535 PPR 189-218 aa PF13812 PPR_3 212-264 aa PF13041 PPR_2 221-266 aa PF01535 PPR 223-253 aa PF23276 TPR_24 241-348 aa PF12854 PPR_1 252-283 aa PF13041 PPR_2 255-304 aa PF01535 PPR 258-288 aa PF13812 PPR_3 279-337 aa PF01535 PPR 293-322 aa PF12854 PPR_1 324-347 aa PF13041 PPR_2 325-372 aa PF01535 PPR 328-358 aa PF13812 PPR_3 328-372 aa PF17177 PPR_long 329-443 aa PF13041 PPR_2 360-409 aa PF01535 PPR 363-393 aa PF13812 PPR_3 384-443 aa PF23276 TPR_24 388-489 aa PF12854 PPR_1 391-424 aa PF01535 PPR 398-428 aa PF13041 PPR_2 402-442 aa PF17177 PPR_long 416-526 aa PF01535 PPR 433-462 aa PF13812 PPR_3 454-512 aa PF17177 PPR_long 454-545 aa PF12854 PPR_1 461-494 aa PF13041 PPR_2 465-510 aa PF01535 PPR 468-496 aa PF12854 PPR_1 497-529 aa PF13041 PPR_2 500-544 aa PF01535 PPR 503-533 aa PF13812 PPR_3 523-580 aa PF12854 PPR_1 531-563 aa PF13041 PPR_2 535-584 aa PF01535 PPR 538-568 aa
XP_057782916.1
295 aa
N
1
148
295
DUF716
C
PF04819 DUF716 117-257 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057782914.1 Pfam PF01535 PPR Repeat 155 182 1.3e-78 254.7 PPR repeat
XP_057782914.1 Pfam PF01535 PPR Repeat 189 218 1.3e-78 254.7 PPR repeat
XP_057782914.1 Pfam PF13812 PPR_3 Repeat 212 264 4.1e-68 226.1 Pentatricopeptide repeat domain
XP_057782914.1 Pfam PF13041 PPR_2 Repeat 221 266 2.4e-120 393.2 PPR repeat family
XP_057782914.1 Pfam PF01535 PPR Repeat 223 253 1.3e-78 254.7 PPR repeat
XP_057782914.1 Pfam PF23276 TPR_24 Repeat 241 348 1.7e-28 99.9 Pentatricopeptide repeat-containing protein
XP_057782914.1 Pfam PF12854 PPR_1 Repeat 252 283 3.3e-91 299.4 PPR repeat
XP_057782914.1 Pfam PF13041 PPR_2 Repeat 255 304 2.4e-120 393.2 PPR repeat family
XP_057782914.1 Pfam PF01535 PPR Repeat 258 288 1.3e-78 254.7 PPR repeat
XP_057782914.1 Pfam PF13812 PPR_3 Repeat 279 337 4.1e-68 226.1 Pentatricopeptide repeat domain
XP_057782914.1 Pfam PF01535 PPR Repeat 293 322 1.3e-78 254.7 PPR repeat
XP_057782914.1 Pfam PF12854 PPR_1 Repeat 324 347 3.3e-91 299.4 PPR repeat
XP_057782914.1 Pfam PF13041 PPR_2 Repeat 325 372 2.4e-120 393.2 PPR repeat family
XP_057782914.1 Pfam PF01535 PPR Repeat 328 358 1.3e-78 254.7 PPR repeat
XP_057782914.1 Pfam PF13812 PPR_3 Repeat 328 372 4.1e-68 226.1 Pentatricopeptide repeat domain
XP_057782914.1 Pfam PF17177 PPR_long Repeat 329 443 2.2e-41 142.3 Pentacotripeptide-repeat region of PRORP
XP_057782914.1 Pfam PF13041 PPR_2 Repeat 360 409 2.4e-120 393.2 PPR repeat family
XP_057782914.1 Pfam PF01535 PPR Repeat 363 393 1.3e-78 254.7 PPR repeat
XP_057782914.1 Pfam PF13812 PPR_3 Repeat 384 443 4.1e-68 226.1 Pentatricopeptide repeat domain
XP_057782914.1 Pfam PF23276 TPR_24 Repeat 388 489 1.7e-28 99.9 Pentatricopeptide repeat-containing protein
XP_057782914.1 Pfam PF12854 PPR_1 Repeat 391 424 3.3e-91 299.4 PPR repeat
XP_057782914.1 Pfam PF01535 PPR Repeat 398 428 1.3e-78 254.7 PPR repeat
XP_057782914.1 Pfam PF13041 PPR_2 Repeat 402 442 2.4e-120 393.2 PPR repeat family
XP_057782914.1 Pfam PF17177 PPR_long Repeat 416 526 2.2e-41 142.3 Pentacotripeptide-repeat region of PRORP
XP_057782914.1 Pfam PF01535 PPR Repeat 433 462 1.3e-78 254.7 PPR repeat
XP_057782914.1 Pfam PF13812 PPR_3 Repeat 454 512 4.1e-68 226.1 Pentatricopeptide repeat domain
XP_057782914.1 Pfam PF17177 PPR_long Repeat 454 545 2.2e-41 142.3 Pentacotripeptide-repeat region of PRORP
XP_057782914.1 Pfam PF12854 PPR_1 Repeat 461 494 3.3e-91 299.4 PPR repeat
XP_057782914.1 Pfam PF13041 PPR_2 Repeat 465 510 2.4e-120 393.2 PPR repeat family
XP_057782914.1 Pfam PF01535 PPR Repeat 468 496 1.3e-78 254.7 PPR repeat
XP_057782914.1 Pfam PF12854 PPR_1 Repeat 497 529 3.3e-91 299.4 PPR repeat
XP_057782914.1 Pfam PF13041 PPR_2 Repeat 500 544 2.4e-120 393.2 PPR repeat family
XP_057782914.1 Pfam PF01535 PPR Repeat 503 533 1.3e-78 254.7 PPR repeat
XP_057782914.1 Pfam PF13812 PPR_3 Repeat 523 580 4.1e-68 226.1 Pentatricopeptide repeat domain
XP_057782914.1 Pfam PF12854 PPR_1 Repeat 531 563 3.3e-91 299.4 PPR repeat
XP_057782914.1 Pfam PF13041 PPR_2 Repeat 535 584 2.4e-120 393.2 PPR repeat family
XP_057782914.1 Pfam PF01535 PPR Repeat 538 568 1.3e-78 254.7 PPR repeat
XP_057782915.1 Pfam PF01535 PPR Repeat 155 182 1.3e-78 254.7 PPR repeat
XP_057782915.1 Pfam PF01535 PPR Repeat 189 218 1.3e-78 254.7 PPR repeat
XP_057782915.1 Pfam PF13812 PPR_3 Repeat 212 264 4.1e-68 226.1 Pentatricopeptide repeat domain
XP_057782915.1 Pfam PF13041 PPR_2 Repeat 221 266 2.4e-120 393.2 PPR repeat family
XP_057782915.1 Pfam PF01535 PPR Repeat 223 253 1.3e-78 254.7 PPR repeat
XP_057782915.1 Pfam PF23276 TPR_24 Repeat 241 348 1.7e-28 99.9 Pentatricopeptide repeat-containing protein
XP_057782915.1 Pfam PF12854 PPR_1 Repeat 252 283 3.3e-91 299.4 PPR repeat
XP_057782915.1 Pfam PF13041 PPR_2 Repeat 255 304 2.4e-120 393.2 PPR repeat family
XP_057782915.1 Pfam PF01535 PPR Repeat 258 288 1.3e-78 254.7 PPR repeat
XP_057782915.1 Pfam PF13812 PPR_3 Repeat 279 337 4.1e-68 226.1 Pentatricopeptide repeat domain
XP_057782915.1 Pfam PF01535 PPR Repeat 293 322 1.3e-78 254.7 PPR repeat
XP_057782915.1 Pfam PF12854 PPR_1 Repeat 324 347 3.3e-91 299.4 PPR repeat
XP_057782915.1 Pfam PF13041 PPR_2 Repeat 325 372 2.4e-120 393.2 PPR repeat family
XP_057782915.1 Pfam PF01535 PPR Repeat 328 358 1.3e-78 254.7 PPR repeat
XP_057782915.1 Pfam PF13812 PPR_3 Repeat 328 372 4.1e-68 226.1 Pentatricopeptide repeat domain
XP_057782915.1 Pfam PF17177 PPR_long Repeat 329 443 2.2e-41 142.3 Pentacotripeptide-repeat region of PRORP
XP_057782915.1 Pfam PF13041 PPR_2 Repeat 360 409 2.4e-120 393.2 PPR repeat family
XP_057782915.1 Pfam PF01535 PPR Repeat 363 393 1.3e-78 254.7 PPR repeat
XP_057782915.1 Pfam PF13812 PPR_3 Repeat 384 443 4.1e-68 226.1 Pentatricopeptide repeat domain
XP_057782915.1 Pfam PF23276 TPR_24 Repeat 388 489 1.7e-28 99.9 Pentatricopeptide repeat-containing protein
XP_057782915.1 Pfam PF12854 PPR_1 Repeat 391 424 3.3e-91 299.4 PPR repeat
XP_057782915.1 Pfam PF01535 PPR Repeat 398 428 1.3e-78 254.7 PPR repeat
XP_057782915.1 Pfam PF13041 PPR_2 Repeat 402 442 2.4e-120 393.2 PPR repeat family
XP_057782915.1 Pfam PF17177 PPR_long Repeat 416 526 2.2e-41 142.3 Pentacotripeptide-repeat region of PRORP
XP_057782915.1 Pfam PF01535 PPR Repeat 433 462 1.3e-78 254.7 PPR repeat
XP_057782915.1 Pfam PF13812 PPR_3 Repeat 454 512 4.1e-68 226.1 Pentatricopeptide repeat domain
XP_057782915.1 Pfam PF17177 PPR_long Repeat 454 545 2.2e-41 142.3 Pentacotripeptide-repeat region of PRORP
XP_057782915.1 Pfam PF12854 PPR_1 Repeat 461 494 3.3e-91 299.4 PPR repeat
XP_057782915.1 Pfam PF13041 PPR_2 Repeat 465 510 2.4e-120 393.2 PPR repeat family
XP_057782915.1 Pfam PF01535 PPR Repeat 468 496 1.3e-78 254.7 PPR repeat
XP_057782915.1 Pfam PF12854 PPR_1 Repeat 497 529 3.3e-91 299.4 PPR repeat
XP_057782915.1 Pfam PF13041 PPR_2 Repeat 500 544 2.4e-120 393.2 PPR repeat family
XP_057782915.1 Pfam PF01535 PPR Repeat 503 533 1.3e-78 254.7 PPR repeat
XP_057782915.1 Pfam PF13812 PPR_3 Repeat 523 580 4.1e-68 226.1 Pentatricopeptide repeat domain
XP_057782915.1 Pfam PF12854 PPR_1 Repeat 531 563 3.3e-91 299.4 PPR repeat
XP_057782915.1 Pfam PF13041 PPR_2 Repeat 535 584 2.4e-120 393.2 PPR repeat family
XP_057782915.1 Pfam PF01535 PPR Repeat 538 568 1.3e-78 254.7 PPR repeat
XP_057782916.1 Pfam PF04819 DUF716 Family 117 257 3.9e-43 147.0 Family of unknown function (DUF716)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057926932.1
TGTAAGCCTACTATATACATAGTGGAAGATTTCTAGACTACGGTCTCGTGGTTTTTCCCAATTTGGGTTTTCCACGTAAAAATTCTTGTCTCATATTTTCTTATATTTTGCACCAAATATTTTTCTTGGTTTGGATCCCATTTTGTAATCCAGCAAGAGGGAAAAGAATTATCCTGGTTCCGCTGTGCAAGTGTCATTTATTTGGACACTCGTGAATATTTATTCCCCACTTTTCCCAACAGTTTGAAATCCAAGTTGAA...
XM_057926931.1
TGTAAGCCTACTATATACATAGTGGAAGATTTCTAGACTACGGTCTCGTGGTTTTTCCCAATTTGGGTTTTCCACGTAAAAATTCTTGTCTCATATTTTCTTATATTTTGCACCAAATATTTTTCTTGGTTTGGATCCCATTTTGTAATCCAGCAAGAGGGAAAAGAATTATCCTGGTTCCGCTGTGCAAGTGTCATTTATTTGGACACTCGTGAATATTTATTCCCCACTTTTCCCAACAGTTTGAAATCCAAGTTGAA...

CDS

3 records

下载 CDS FASTA
LOC131000829
ATGGGAACTTTTCTCGGTCATCTAGTGCCTGGGCTGGCCCTTGCTTCTCTTGGTCTATGGCACATTACAAACATCCTGCGCAGTTACTTTCTGAAAGGCTCTTGCAAGTTTATGTTAAGGTTTTGGTACCCACTGAGGTGTTCACTTCGGATGCTAGAGCACCTCGAGCTCATACTTATCCTGTTTTTTTCTTTATTTGCGATTCTGATCCAGATAGTAGACATTCAACACCCTCACTTCTTCTTCGAGCTTGACAATGT...
LOC131000829
ATGAAATGGCGCAAAATTCTTCGTCTGTATAAATTCCGTGCCTACAAATTTCTTCCGTTTCAGGTTCATTACCACCATTTTTCTTCATCCGCTCACCCACCGCCGGCGCCGCCAATTTCTCCGACAACACCCCATATTCTTGTTTCTTTTGCCAAATCTTCTCAGTGGCAATTAATCAAACACCTTTCCCCAAACTTGACCCCTGCTCTAATAGCTTCCACCCTCATCCATCTCCGTGGTTTCCCTGTCCTCGCCGTTGA...

Protein

3 records

下载 Protein FASTA
XP_057782914.1
MKWRKILRLYKFRAYKFLPFQVHYHHFSSSAHPPPAPPISPTTPHILVSFAKSSQWQLIKHLSPNLTPALIASTLIHLRGFPVLAVDFVGNIDRDSLTNECYCLAVAIAARCPSPNHALQLLKELISSRPLMCREIFYGLVGARERLSISSTIVLNLLIRAHCELNRGNGVMECFGLMKRMRVLPSVETWNCMFSLFLRLNEMGTVWGLYGEIIRLGIRSSIFTLNMLINQLSKEGNLKKAEELVGYMEGLGIKPNIVTY...
XP_057782915.1
MKWRKILRLYKFRAYKFLPFQVHYHHFSSSAHPPPAPPISPTTPHILVSFAKSSQWQLIKHLSPNLTPALIASTLIHLRGFPVLAVDFVGNIDRDSLTNECYCLAVAIAARCPSPNHALQLLKELISSRPLMCREIFYGLVGARERLSISSTIVLNLLIRAHCELNRGNGVMECFGLMKRMRVLPSVETWNCMFSLFLRLNEMGTVWGLYGEIIRLGIRSSIFTLNMLINQLSKEGNLKKAEELVGYMEGLGIKPNIVTY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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