当前解析结果
SmilChr08G001377| 统一新 Gene ID | SmilChr08G001377 |
|---|---|
| 名称 | SmilChr08G001377 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase RKF3 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 10976505 - 10977277 / + |
| NCBI Gene ID | LOC130998066 |
|---|---|
| GeneID | 130998066 |
| locus_tag | - |
| NCBI Name | LOC130998066 |
| 原始查询 | SmilChr08G001377 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase RKF3 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase RKF3 |
| Arabidopsis | AT2G48010 (RKF3)receptor-like kinase in in flowers 3 [Source:NCBI gene (formerly Entrezgene);Acc:819413] identity=52.6; qcov=0.739; evalue=2.79e-48; confidence=medium |
| Rice | Os01g0384300 (OSJNBb0093M23.7)- identity=47.1; qcov=0.735; evalue=1.2e-30; confidence=medium |
| GO | GO:0005524 (ATP binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998066 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057779482.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057779482.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057779482.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779482.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779482.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:10976544 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | C42,D6 |
Chr8:10976544 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C42,D6 |
Chr8:10976559 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B38 |
Chr8:10976578 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr8:10976583 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | A1,A20,B22,B40,C20,C5,C65 |
Chr8:10976591 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B78,C23 |
Chr8:10976601 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B40,C5 |
Chr8:10976613 |
C |
T |
EMS_canonical_SNV | stop_gained | 10 | A13,A14,B111,B114,B21,B36,C42,C6,D6,D7 |
Chr8:10976614 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr8:10976632 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B75,C19,C82 |
Chr8:10976634 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A13,D7 |
Chr8:10976635 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D10 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。