当前解析结果
SmilChr08G001380| 统一新 Gene ID | SmilChr08G001380 |
|---|---|
| 名称 | SmilChr08G001380 |
| 描述 | acetylserotonin O-methyltransferase-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 10993159 - 10994619 / - |
| NCBI Gene ID | LOC131000875 |
|---|---|
| GeneID | 131000875 |
| locus_tag | - |
| NCBI Name | LOC131000875 |
| 原始查询 | SmilChr08G001380 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | acetylserotonin O-methyltransferase-like |
| 产物 | acetylserotonin O-methyltransferase-like |
| Arabidopsis | AT4G35160 (AT4G35160)O-methyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829668] identity=47.7; qcov=1.05; evalue=2.54e-98; confidence=high |
| Rice | Os12g0441300- identity=35.8; qcov=1.03; evalue=2.54e-65; confidence=medium |
| GO | GO:0008171 (O-methyltransferase activity); GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity); GO:0019438 (GO:0019438); GO:0032259 (methylation); GO:0046983 (protein dimerization activity) |
| KEGG | smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00891 (Methyltransf_2); PF08100 (Dimerisation) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000875 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057782990.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057782990.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057782990.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057782990.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057782990.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:10993998 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr8:10994193 |
TCG |
T |
2bp_deletion | frameshift_variant | 1 | B2 |
Chr8:10994193 |
TCG |
T |
2bp_deletion | CDS_variant | 1 | B2 |
Chr8:10994418 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057782990.1PF08100
Dimerisation 15-93 aa
PF00891
Methyltransf_2 116-318 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782990.1 |
Pfam | PF08100 |
Dimerisation | Domain | 15 | 93 | 1.1e-18 | 67.6 | O-methyltransferase dimerisation domain |
XP_057782990.1 |
Pfam | PF00891 |
Methyltransf_2 | Domain | 116 | 318 | 1.4e-45 | 156.0 | O-methyltransferase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。