Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001422`

染色体: Chr08 坐标: 11371552-11375094 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001422`
名称	SmilChr08G001422
描述	26S proteasome regulatory subunit S10B homolog B-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	11371552 - 11375094 / `+`

ID 对照

NCBI Gene ID	`LOC131000973`
GeneID	`131000973`
locus_tag	`-`
NCBI Name	`LOC131000973`
原始查询	`SmilChr08G001422`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	26S proteasome regulatory subunit S10B homolog B-like
产物	26S proteasome regulatory subunit S10B homolog B-like
Arabidopsis	`AT1G45000` (AT1G45000) AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:841065] identity=92.5; qcov=0.995; evalue=0; confidence=high
Rice	`Os02g0199900` (OsRpt4a) - identity=90; qcov=1; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0008540 (proteasome regulatory particle, base subcomplex); GO:0016887 (ATP hydrolysis activity); GO:0030433 (GO:0030433); GO:0031597 (cytosolic proteasome complex); GO:0036402 (proteasome-activating activity); GO:0045899 (positive regulation of RNA polymerase II transcription preinitiation complex assembly)
KEGG	smil03050 (Proteasome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00004 (AAA); PF07728 (AAA_5); PF16450 (Prot_ATP_ID_OB_C); PF17862 (AAA_lid_3)
InterPro	-
eggNOG	-
NR	GeneID:131000973

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057783107.1`
2	Nucleus	细胞核	0.80000	`XP_057783107.1`
3	Cytosol	细胞质基质	0.60000	`XP_057783107.1`
4	Cytoskeleton	细胞骨架	0.20000	`XP_057783107.1`
5	Chromosome	染色体	0.00000	`XP_057783107.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:11373088`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr8:11373326`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr8:11373619`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:11374874`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783107.1

400 aa

200

400

Prot_ATP_ID_OB_C

AAA_5

AAA

AAA_lid_3

PF16450 Prot_ATP_ID_OB_C 64-119 aa PF07728 AAA_5 176-297 aa PF00004 AAA 177-310 aa PF17862 AAA_lid_3 333-375 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783107.1`	Pfam	`PF16450`	Prot_ATP_ID_OB_C	Domain	64	119	2.5e-15	56.8	Proteasomal ATPase OB C-terminal domain
`XP_057783107.1`	Pfam	`PF07728`	AAA_5	Domain	176	297	2.2e-06	28.4	AAA domain (dynein-related subfamily)
`XP_057783107.1`	Pfam	`PF00004`	AAA	Domain	177	310	8.1e-44	150.0	ATPase family associated with various cellular activities (AAA)
`XP_057783107.1`	Pfam	`PF17862`	AAA_lid_3	Domain	333	375	1e-12	48.1	AAA+ lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057927124.1
GGAAAATAGTTCTTGTATCCAACAGCATCCCTTGAAAAATAAACATAAAAAGAAATTAAATAAAATTAAAGAGTTCTCTTTTTCTTGGGCAGGAAGACGAGTAAATAAAAACATTTAAAGGTGCGGAGATTAGGAATTTTTTGCTATTCGCCTCAGAGAAGAAGCAATGGCTACCACCGAGAGCGACGACGCCATCCGCCGCAAATCGGCCATCGCAGATTACCGGAAAAAGCTTCTCAACCATAAGGAACTCGAGGGCC...

CDS

1 records

下载 CDS FASTA

LOC131000973
ATGGCTACCACCGAGAGCGACGACGCCATCCGCCGCAAATCGGCCATCGCAGATTACCGGAAAAAGCTTCTCAACCATAAGGAACTCGAGGGCCGCGTTCGATCTGTAAGGGAGAATTTGAGAGCTATAAAGAAGGAGTATGCTAAAACAGAAGATGATCTGAAGTCCCTTCAAAGTGTTGGACAGATTATAGGTGAAGTGCTGAGACCGCTGGACAATGAACGCTTGATAGTCAAAGCAAGCAGTGGCCCTAGATATGT...

Protein

1 records

下载 Protein FASTA

XP_057783107.1
MATTESDDAIRRKSAIADYRKKLLNHKELEGRVRSVRENLRAIKKEYAKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKDKLTAGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFVRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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