Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001431`

染色体: Chr08 坐标: 11461544-11462937 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001431`
名称	SmilChr08G001431
描述	syntaxin-112-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	11461544 - 11462937 / `+`

ID 对照

NCBI Gene ID	`LOC131000981`
GeneID	`131000981`
locus_tag	`-`
NCBI Name	`LOC131000981`
原始查询	`SmilChr08G001431`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	syntaxin-112-like
产物	syntaxin-112-like
Arabidopsis	`AT2G18260` (SYP112) syntaxin of plants 112 [Source:NCBI gene (formerly Entrezgene);Acc:816342] identity=45.6; qcov=1.08; evalue=9.19e-82; confidence=high
Rice	`Os03g0736500` (KN) - identity=43.2; qcov=1.02; evalue=4.22e-66; confidence=medium
GO	GO:0000149 (SNARE binding); GO:0005484 (SNAP receptor activity); GO:0005886 (plasma membrane); GO:0006886 (intracellular protein transport); GO:0006887 (exocytosis); GO:0006906 (vesicle fusion); GO:0012505 (endomembrane system); GO:0031201 (SNARE complex); GO:0048278 (GO:0048278)
KEGG	smil04130 (SNARE interactions in vesicular transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF00804 (Syntaxin); PF05739 (SNARE)
InterPro	-
eggNOG	-
NR	GeneID:131000981

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057783117.1`
2	Vacuole membrane	液泡膜	0.80000	`XP_057783117.1`
3	Cell membrane	细胞膜	0.40000	`XP_057783117.1`
4	Trans-golgi network	Trans-golgi network	0.20000	`XP_057783117.1`
5	Nucleus	细胞核	0.00000	`XP_057783117.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:11462114`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr8:11462223`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B112,B22
`Chr8:11462309`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C56
`Chr8:11462442`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,B22
`Chr8:11462517`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,B22
`Chr8:11462712`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B14,B57,B94
`Chr8:11462787`	`CT`	`C`	1bp_deletion	frameshift_variant	5	B26,C17,C40,C50,C63
`Chr8:11462787`	`CT`	`C`	1bp_deletion	CDS_variant	5	B26,C17,C40,C50,C63

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783117.1

283 aa

142

283

Syntaxin

SNARE

PF00804 Syntaxin 38-166 aa PF05739 SNARE 194-268 aa

XP_057783118.1

283 aa

142

283

Syntaxin

SNARE

PF00804 Syntaxin 38-166 aa PF05739 SNARE 194-268 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783117.1`	Pfam	`PF00804`	Syntaxin	Domain	38	166	8.9e-28	97.8	Syntaxin
`XP_057783117.1`	Pfam	`PF05739`	SNARE	Domain	194	268	2.8e-19	69.5	SNARE domain
`XP_057783118.1`	Pfam	`PF00804`	Syntaxin	Domain	38	166	8.9e-28	97.8	Syntaxin
`XP_057783118.1`	Pfam	`PF05739`	SNARE	Domain	194	268	2.8e-19	69.5	SNARE domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927135.1
AAATGGTAACGGCTACTAAATAATTCATTTCGTTCCCACATTTAAATTTAGAAAATTCCAACGGAACGCACCGCCCTTGCCTTTGAACTCTCTTCTCTCAGATTGCGATTCCAGTTCTCTTCTCTTCGAAAAGGCTGATCTTGAAGAAATTGCGTCCAACAAATAATATTTTCTTGTCCAGTTTCATCTCTGTGAAGCGGGAAGATGAATGACCTAATGACGAAGTCGTTTCTAAGTTATGTGGATCTGAAGAAACAAGC...

XM_057927134.1
AATTCCAACGGAACGCACCGCCCTTGCCTTTGAACTCTCTTCTCTCAGATTGCGATTCCAGTTCTCTTCTCTTCGAAAAGGTTGTTCATCTAATTCCTCATTCTTGATACAAACTGCAAAGTATTCTTCTTTTTCTCGCACTCTGTTTTTGGTTGGTATCATCATCGTCTACTCTCTTCCTTGATTTGGATATAATCGTTACAGGCTGATCTTGAAGAAATTGCGTCCAACAAATAATATTTTCTTGTCCAGTTTCATCT...

CDS

2 records

下载 CDS FASTA

LOC131000981
ATGAATGACCTAATGACGAAGTCGTTTCTAAGTTATGTGGATCTGAAGAAACAAGCGATGAAGGATGTAGAAAGAGATGTGGAGATGGGGCAACTCGAGCCTTCACACGAAATGAACCTTTCTAAATTCTTGGAAGAAGCAGGCGCAGTGAAGGCCGAGATGGAAGAAATCACCAACCTCCTCCTCCATCTTCAACACCTCCACGACGAGACCAAATCCGCGCAAAGCTCCAAAATCCTCCGAGGCCTGACGGATCAGAT...

Protein

2 records

下载 Protein FASTA

XP_057783117.1
MNDLMTKSFLSYVDLKKQAMKDVERDVEMGQLEPSHEMNLSKFLEEAGAVKAEMEEITNLLLHLQHLHDETKSAQSSKILRGLTDQINSDMVTVLRKAKTIKSRLESLDKSNVANRSLSADYREGGHVDRTRTGVTHGLRIKLKEMMNDFQCLREKIVQEHKQGVESSDGMVERATSDGRVVVFDGKGELFEENRQRDEAVKDLQRSLVELHQVFLDMAVMVDAQADNLNNIEQNVVSAASDVRGGAKELDRASQMKKRR...

XP_057783118.1
MNDLMTKSFLSYVDLKKQAMKDVERDVEMGQLEPSHEMNLSKFLEEAGAVKAEMEEITNLLLHLQHLHDETKSAQSSKILRGLTDQINSDMVTVLRKAKTIKSRLESLDKSNVANRSLSADYREGGHVDRTRTGVTHGLRIKLKEMMNDFQCLREKIVQEHKQGVESSDGMVERATSDGRVVVFDGKGELFEENRQRDEAVKDLQRSLVELHQVFLDMAVMVDAQADNLNNIEQNVVSAASDVRGGAKELDRASQMKKRR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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