当前解析结果
SmilChr08G001440| 统一新 Gene ID | SmilChr08G001440 |
|---|---|
| 名称 | SmilChr08G001440 |
| 描述 | probable inactive purple acid phosphatase 9 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 11550659 - 11557114 / + |
| NCBI Gene ID | LOC131000989 |
|---|---|
| GeneID | 131000989 |
| locus_tag | - |
| NCBI Name | LOC131000989 |
| 原始查询 | SmilChr08G001440 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable inactive purple acid phosphatase 9 |
| 产物 | probable inactive purple acid phosphatase 9 |
| Arabidopsis | AT1G13900 (PAP2)Purple acid phosphatases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837949] identity=61.2; qcov=0.997; evalue=0; confidence=high |
| Rice | Os07g0111600 (OsPAP9a)- identity=55.5; qcov=0.954; evalue=0; confidence=high |
| GO | GO:0003993 (acid phosphatase activity); GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | PF00149 (Metallophos); PF14008 (Metallophos_C); PF16656 (Pur_ac_phosph_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000989 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057783124.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.60000 | XP_057783124.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057783124.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057783124.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057783124.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:11551143 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B23,B56,B96 |
Chr8:11551171 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B59,C47,C71 |
Chr8:11551206 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B84,B98 |
Chr8:11551237 |
A |
AC |
1bp_insertion | frameshift_variant | 5 | A10,B100,C51,C66,C70 |
Chr8:11551237 |
A |
AC |
1bp_insertion | CDS_variant | 5 | A10,B100,C51,C66,C70 |
Chr8:11551241 |
C |
CG |
1bp_insertion | frameshift_variant | 18 | A14,A9,B138,B17,B2,B41,B44,B60,B85,B88,C12,C27,C44,C51,C61,C62,C75,C85 |
Chr8:11551311 |
G |
GAT |
2bp_insertion | frameshift_variant | 30 | A14,A5,A9,B103,B137,B138,B17,B2,B41,B42,B43,B44,B60,B7,B70,B80,B88,B93,C10,C12,C27,C4,C42,C43,C44,C48,C61,C62,C75,C81 |
Chr8:11551376 |
G |
A |
EMS_canonical_SNV | stop_gained | 98 | A10,A11,A14,A16,A19,A21,A24,A3,A5,A6,A7,A8,B10,B100,B102,B103,B109,B11,B110,B111,B112,B113,B128,B130,B131,B134,B136,B139,B14,B16,B20,B21,B23,B25,B26,B29,B31,B33,B36,B37,B43,B44,B45,B50,B51,B52,B54,B55,B56,B57,B58,B60,B61,B64,B67,B68,B69,B70,B72,B79,B8,B82,B85,B87,B9,B93,C10,C13,C18,C20,C22,C23,C25,C27,C29,C30,C35,C36,C38,C40,C41,C42,C43,C46,C55,C57,C58,C65,C70,C71,C73,C74,C9,D1,D10,D4,D6,D8 |
Chr8:11551421 |
AC |
A |
1bp_deletion | frameshift_variant | 93 | A10,A11,A14,A16,A19,A24,A3,A5,A6,A7,A8,B10,B100,B103,B109,B11,B111,B112,B113,B128,B131,B134,B136,B139,B14,B16,B20,B21,B25,B26,B29,B31,B33,B36,B37,B43,B44,B45,B50,B51,B52,B54,B56,B57,B60,B61,B64,B67,B70,B72,B76,B8,B81,B82,B85,B9,B93,B96,C10,C13,C18,C20,C22,C25,C27,C28,C29,C30,C35,C36,C38,C40,C41,C42,C43,C46,C53,C55,C57,C58,C60,C65,C70,C71,C73,C79,C9,D1,D10,D4,D6,D8,D9 |
Chr8:11551440 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,B34 |
Chr8:11551458 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr8:11551464 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783124.1PF16656
Pur_ac_phosph_N 144-246 aa
PF00149
Metallophos 281-486 aa
PF14008
Metallophos_C 511-578 aa
XP_057783125.1PF16656
Pur_ac_phosph_N 144-246 aa
PF00149
Metallophos 281-486 aa
PF14008
Metallophos_C 511-578 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783124.1 |
Pfam | PF16656 |
Pur_ac_phosph_N | Domain | 144 | 246 | 3.1e-20 | 73.3 | Purple acid Phosphatase, N-terminal domain |
XP_057783124.1 |
Pfam | PF00149 |
Metallophos | Domain | 281 | 486 | 4.3e-14 | 54.1 | Calcineurin-like phosphoesterase |
XP_057783124.1 |
Pfam | PF14008 |
Metallophos_C | Domain | 511 | 578 | 2e-15 | 57.9 | Iron/zinc purple acid phosphatase-like protein C |
XP_057783125.1 |
Pfam | PF16656 |
Pur_ac_phosph_N | Domain | 144 | 246 | 3.1e-20 | 73.3 | Purple acid Phosphatase, N-terminal domain |
XP_057783125.1 |
Pfam | PF00149 |
Metallophos | Domain | 281 | 486 | 4.3e-14 | 54.1 | Calcineurin-like phosphoesterase |
XP_057783125.1 |
Pfam | PF14008 |
Metallophos_C | Domain | 511 | 578 | 2e-15 | 57.9 | Iron/zinc purple acid phosphatase-like protein C |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。