Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001453`

染色体: Chr08 坐标: 11696264-11702898 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001453`
名称	SmilChr08G001453
描述	kinesin-like protein KIN-7C
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	11696264 - 11702898 / `+`

ID 对照

NCBI Gene ID	`LOC131001001`
GeneID	`131001001`
locus_tag	`-`
NCBI Name	`LOC131001001`
原始查询	`SmilChr08G001453`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	kinesin-like protein KIN-7C
产物	kinesin-like protein KIN-7C
Arabidopsis	`AT2G21300` (AT2G21300) ATP binding microtubule motor family protein [Source:NCBI gene (formerly Entrezgene);Acc:816669] identity=64; qcov=0.576; evalue=0; confidence=medium
Rice	`Os02g0645100` (KIN7C) - identity=51.3; qcov=1.01; evalue=0; confidence=high
GO	GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding)
KEGG	smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage))
Pfam	PF00225 (Kinesin); PF11995 (DUF3490); PF16796 (Microtub_bd)
InterPro	-
eggNOG	-
NR	GeneID:131001001

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057783139.1`
2	Phragmoplast	Phragmoplast	1.00000	`XP_057783139.1`
3	Spindle	Spindle	0.40000	`XP_057783139.1`
4	Chromosome	染色体	0.20000	`XP_057783139.1`
5	Spindle pole	Spindle pole	0.20000	`XP_057783139.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:11697840`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C12,C46
`Chr8:11697849`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr8:11700017`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr8:11700127`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B32,C62
`Chr8:11700910`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B32,C62
`Chr8:11700930`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B133,B4,B53,B76,C10
`Chr8:11700948`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:11701123`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr8:11701545`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C12,C46
`Chr8:11701684`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr8:11701692`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B6
`Chr8:11702096`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B101,B129,C15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783139.1

915 aa

458

915

Microtub_bd

Kinesin

DUF3490

PF16796 Microtub_bd 25-162 aa PF00225 Kinesin 31-347 aa PF11995 DUF3490 736-895 aa

XP_057783141.1

915 aa

458

915

Microtub_bd

Kinesin

DUF3490

PF16796 Microtub_bd 25-162 aa PF00225 Kinesin 31-347 aa PF11995 DUF3490 736-895 aa

XP_057783142.1

915 aa

458

915

Microtub_bd

Kinesin

DUF3490

PF16796 Microtub_bd 25-162 aa PF00225 Kinesin 31-347 aa PF11995 DUF3490 736-895 aa

XP_057783143.1

915 aa

458

915

Microtub_bd

Kinesin

DUF3490

PF16796 Microtub_bd 25-162 aa PF00225 Kinesin 31-347 aa PF11995 DUF3490 736-895 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783139.1`	Pfam	`PF16796`	Microtub_bd	Domain	25	162	4.6e-20	72.8	Microtubule binding
`XP_057783139.1`	Pfam	`PF00225`	Kinesin	Domain	31	347	2.1e-97	326.8	Kinesin motor domain
`XP_057783139.1`	Pfam	`PF11995`	DUF3490	Family	736	895	1.8e-66	223.6	Domain of unknown function (DUF3490)
`XP_057783141.1`	Pfam	`PF16796`	Microtub_bd	Domain	25	162	4.6e-20	72.8	Microtubule binding
`XP_057783141.1`	Pfam	`PF00225`	Kinesin	Domain	31	347	2.1e-97	326.8	Kinesin motor domain
`XP_057783141.1`	Pfam	`PF11995`	DUF3490	Family	736	895	1.8e-66	223.6	Domain of unknown function (DUF3490)
`XP_057783142.1`	Pfam	`PF16796`	Microtub_bd	Domain	25	162	4.6e-20	72.8	Microtubule binding
`XP_057783142.1`	Pfam	`PF00225`	Kinesin	Domain	31	347	2.1e-97	326.8	Kinesin motor domain
`XP_057783142.1`	Pfam	`PF11995`	DUF3490	Family	736	895	1.8e-66	223.6	Domain of unknown function (DUF3490)
`XP_057783143.1`	Pfam	`PF16796`	Microtub_bd	Domain	25	162	4.6e-20	72.8	Microtubule binding
`XP_057783143.1`	Pfam	`PF00225`	Kinesin	Domain	31	347	2.1e-97	326.8	Kinesin motor domain
`XP_057783143.1`	Pfam	`PF11995`	DUF3490	Family	736	895	1.8e-66	223.6	Domain of unknown function (DUF3490)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057927156.1
TTCCAAACCAATTATAACGTTCACGCTGATCTTTCACCGCGCTTCAGTTCACCGTCTGACTGTTTGTTATTGTGTGTGTGTGTGTGTGTGAACATATACATATTATGTAGAGAGAGAGAGAGGGTGACTGATGCTATTCGAAGTTTAGAGGAACTTCAGCTTGCAATATCTCAACTCCTGTTAGCTTGTTGGAATTAGGCGGGTGCGTGGGGGGTGGGGGTGGGGTTGGTAAGAGTTTCGACGAATTTTTCTGTTGCATT...

XM_057927158.1
TGTCGTTTCTGGTTCTACAAGTTCACGCTTCAACCGCTCTGTTCTATGAAAAATATTGAGCTTTCTTCAGTTGGATTTTGGGGCTAGGAACAATTTTAGCTGGATCCGTACATTTTTTCTAGAATGTGATTGAATTTAATGTTTGCAGTTGCAGTAGTTTGTTGGAAAAGAAGCTTCCGCGCAATTGCAAAGCTCTAATTTGAAGCATCGGGTAAATAGGAAACATCATTCTTCAGATAAACCATGTTGGATTACTCCTA...

CDS

4 records

下载 CDS FASTA

LOC131001001
ATGGGAGCTATGGGAGGTGAAGAATTGATGGATTGGGAGAAGATGCAAGGTGTGGGGAATGGGACAGAAGAGAAAATTTTGGTGTTGGTGAGATTAAGGCCATTGAGTGAGAAGGAGATTGCTCGGAATGACGTTGCTGATTGGGAATGCATCAACTCAACCACCATTTTGTACAGGAACAGCCTCCAGGAGAGGTCAGGACTTCCAACAGCTTATTCATTTGACCGAGTTTTTAGGGGTGACTGCAAAACAAGAGAAGT...

Protein

4 records

下载 Protein FASTA

XP_057783139.1
MGAMGGEELMDWEKMQGVGNGTEEKILVLVRLRPLSEKEIARNDVADWECINSTTILYRNSLQERSGLPTAYSFDRVFRGDCKTREVYDEEIKDIALSVVGGINSTIFAYGQTSSGKTYTMNGITEYTVADIYDYIQKHDERAFVLKFSAMEIYNEVVRDLLSSDNNQLRLLDDPEKGMIIEKLTEETLRDWNHLKELLSICEAQRQIGETSLNEKSSRSHQILRLTIESSAREFIGKGNSTTLAASVNFVDLAGSERAS...

XP_057783141.1
MGAMGGEELMDWEKMQGVGNGTEEKILVLVRLRPLSEKEIARNDVADWECINSTTILYRNSLQERSGLPTAYSFDRVFRGDCKTREVYDEEIKDIALSVVGGINSTIFAYGQTSSGKTYTMNGITEYTVADIYDYIQKHDERAFVLKFSAMEIYNEVVRDLLSSDNNQLRLLDDPEKGMIIEKLTEETLRDWNHLKELLSICEAQRQIGETSLNEKSSRSHQILRLTIESSAREFIGKGNSTTLAASVNFVDLAGSERAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器