当前解析结果
SmilChr08G001458| 统一新 Gene ID | SmilChr08G001458 |
|---|---|
| 名称 | SmilChr08G001458 |
| 描述 | uncharacterized SmilChr08G001458 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 11748743 - 11749744 / + |
| NCBI Gene ID | LOC130998078 |
|---|---|
| GeneID | 130998078 |
| locus_tag | - |
| NCBI Name | LOC130998078 |
| 原始查询 | SmilChr08G001458 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0225900; species=rice; confidence=low |
| 产物 | hit=Os08g0225900; species=rice; confidence=low |
| Arabidopsis | AT3G47680 (AT3G47680)DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922] identity=27.2; qcov=0.392; evalue=1.76e-06; confidence=low |
| Rice | Os08g0225900- identity=29.3; qcov=0.834; evalue=1.93e-19; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998078 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779494.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057779494.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057779494.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057779494.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057779494.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:11748746 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A23,B137,B8,C7 |
Chr8:11748758 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr8:11748759 |
CA |
C |
1bp_deletion | frameshift_variant | 28 | A14,A16,A20,B102,B120,B127,B133,B135,B25,B28,B3,B35,B38,B59,B77,B79,B85,B97,C12,C30,C36,C40,C58,C59,C61,C84,D1,D9 |
Chr8:11748772 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B77,C19 |
Chr8:11748774 |
TA |
T |
1bp_deletion | frameshift_variant | 2 | B7,C69 |
Chr8:11748774 |
TA |
T |
1bp_deletion | CDS_variant | 2 | B7,C69 |
Chr8:11748783 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B73,C3,C37 |
Chr8:11748787 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B22,B54,C41 |
Chr8:11748821 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B4,B66,C12,C43 |
Chr8:11748831 |
T |
TG |
1bp_insertion | frameshift_variant | 7 | B132,B28,B38,B39,B95,B98,C84 |
Chr8:11748842 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B18,B59,B89,C47 |
Chr8:11748845 |
C |
T |
EMS_canonical_SNV | stop_gained | 45 | A11,A18,A22,A3,B105,B110,B111,B115,B118,B122,B123,B124,B125,B132,B134,B135,B138,B14,B140,B17,B27,B35,B50,B58,B65,B70,B86,B90,B92,C11,C12,C17,C22,C38,C39,C41,C45,C50,C6,C62,C80,C81,C9,D5,D6 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。