Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001475`

染色体: Chr08 坐标: 11906903-11927849 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001475`
名称	SmilChr08G001475
描述	bZIP transcription factor 29
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	11906903 - 11927849 / `-`

ID 对照

NCBI Gene ID	`LOC131001023`
GeneID	`131001023`
locus_tag	`-`
NCBI Name	`LOC131001023`
原始查询	`SmilChr08G001475`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bZIP transcription factor 29
产物	bZIP transcription factor 29
Arabidopsis	`AT4G38900` (AT4G38900) Basic-leucine zipper (bZIP) transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830045] identity=57.9; qcov=0.965; evalue=1.39e-179; confidence=high
Rice	`Os08g0543900` (OsbZIP68) - identity=47.1; qcov=0.789; evalue=4.39e-98; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF00170 (bZIP_1); PF07716 (bZIP_2)
InterPro	-
eggNOG	-
NR	GeneID:131001023

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783171.1`
2	Chromosome	染色体	0.00000	`XP_057783171.1`
3	Centromere	着丝粒	0.00000	`XP_057783171.1`
4	Chromatin	染色质	0.00000	`XP_057783171.1`
5	Telomere	端粒	0.00000	`XP_057783171.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:11908616`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	B103,B61
`Chr8:11908616`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B103,B61
`Chr8:11908636`	`AT`	`A`	1bp_deletion	frameshift_variant	8	B102,B11,B44,B66,B69,B8,C1,C26
`Chr8:11908805`	`G`	`GTA`	2bp_insertion	frameshift_variant	51	A16,A18,A22,A3,B10,B103,B110,B112,B113,B127,B129,B132,B37,B41,B50,B52,B67,B7,B72,B73,B8,B80,B86,B88,B9,B90,B91,B92,B99,C11,C14,C26,C3,C31,C33,C37,C40,C43,C44,C52,C53,C63,C65,C67,C69,C81,C86,C87,D4,D8,D9
`Chr8:11909031`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr8:11909033`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C4,C78
`Chr8:11909163`	`GGT`	`G`	2bp_deletion	frameshift_variant	145	A10,A11,A13,A15,A22,A23,A25,A4,A7,A8,A9,B1,B100,B105,B107,B108,B110,B111,B113,B114,B115,B117,B118,B119,B12,B120,B121,B124,B125,B129,B133,B135,B136,B137,B138,B139,B14,B15,B16,B17,B18,B22,B23,B25,B27,B28,B3,B30,B31,B32,B33,B35,B36,B37,B38,B39,B4,B43,B46,B48,B5,B51,B52,B53,B55,B56,B57,B58,B59,B6,B60,B61,B63,B65,B67,B68,B70,B71,B73,B75,B76,B77,B78,B82,B83,B84,B86,B87,B9,B90,B92,B95,B96,B97,C11,C14,C16,C18,C19,C2,C20,C24,C25,C27,C28,C29,C30,C31,C33,C34,C36,C38,C40,C45,C46,C50,C54,C55,C56,C57,C59,C6,C62,C68,C69,C7,C70,C71,C72,C74,C75,C76,C77,C78,C8,C80,C81,C83,C84,C9,D1,D2,D6,D7,D9
`Chr8:11909169`	`A`	`AC`	1bp_insertion	frameshift_variant	147	A10,A11,A13,A15,A22,A23,A25,A4,A6,A7,A8,A9,B1,B100,B105,B107,B108,B110,B111,B113,B114,B115,B117,B118,B119,B12,B120,B121,B124,B125,B129,B133,B135,B136,B137,B138,B139,B14,B15,B16,B17,B18,B22,B23,B25,B27,B28,B3,B30,B31,B32,B33,B35,B36,B37,B38,B39,B4,B43,B46,B48,B5,B51,B52,B53,B55,B56,B57,B58,B59,B6,B60,B61,B63,B65,B67,B68,B70,B71,B73,B75,B76,B77,B78,B82,B83,B84,B86,B87,B9,B90,B92,B95,B96,B97,C11,C14,C16,C18,C19,C2,C20,C21,C24,C25,C27,C28,C29,C30,C31,C33,C34,C36,C38,C40,C45,C46,C50,C54,C55,C56,C57,C59,C6,C62,C68,C69,C7,C70,C71,C72,C74,C75,C76,C77,C78,C8,C80,C81,C83,C84,C9,D1,D2,D6,D7,D9
`Chr8:11909171`	`T`	`TC`	1bp_insertion	frameshift_variant	147	A10,A11,A13,A15,A22,A23,A25,A4,A6,A7,A8,A9,B1,B100,B105,B107,B108,B110,B111,B113,B114,B115,B117,B118,B119,B12,B120,B121,B124,B125,B129,B133,B136,B137,B138,B139,B14,B15,B16,B17,B18,B22,B23,B25,B27,B28,B3,B30,B31,B32,B33,B35,B36,B37,B38,B39,B4,B43,B46,B48,B5,B51,B52,B53,B55,B56,B57,B58,B59,B6,B60,B61,B63,B65,B67,B68,B70,B71,B73,B75,B76,B77,B78,B82,B83,B84,B86,B87,B9,B90,B92,B95,B96,B97,C11,C14,C16,C18,C19,C2,C20,C21,C24,C25,C27,C28,C29,C30,C31,C33,C34,C36,C38,C40,C45,C46,C50,C51,C54,C55,C56,C57,C59,C6,C62,C68,C69,C7,C70,C71,C72,C74,C75,C76,C77,C78,C8,C80,C81,C83,C84,C9,D1,D2,D6,D7,D9
`Chr8:11909196`	`AT`	`A`	1bp_deletion	frameshift_variant	14	B102,B11,B112,B44,B66,B69,B73,B8,C1,C11,C26,C37,C65,C69
`Chr8:11909334`	`C`	`CCT`	2bp_insertion	frameshift_variant	67	A2,A21,A5,A8,B107,B115,B119,B121,B130,B131,B134,B138,B139,B14,B15,B17,B18,B20,B25,B3,B31,B38,B40,B43,B53,B54,B6,B61,B62,B65,B7,B76,B77,B79,B88,B99,C11,C13,C18,C22,C23,C24,C25,C27,C29,C31,C32,C35,C4,C41,C44,C5,C51,C57,C61,C62,C67,C69,C7,C73,C78,C79,C8,C81,C85,D3,D7
`Chr8:11909335`	`TCG`	`T`	2bp_deletion	frameshift_variant	69	A2,A21,A5,A8,B107,B111,B115,B119,B121,B130,B131,B134,B138,B139,B14,B15,B17,B18,B20,B25,B3,B31,B38,B40,B43,B53,B54,B6,B61,B62,B65,B7,B76,B77,B79,B88,B99,C11,C13,C18,C22,C23,C24,C25,C27,C29,C31,C32,C35,C4,C41,C44,C5,C51,C57,C61,C62,C67,C69,C7,C73,C78,C79,C8,C81,C85,D3,D5,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783171.1

573 aa

286

573

bZIP_2

bZIP_1

PF07716 bZIP_2 417-469 aa PF00170 bZIP_1 420-478 aa

XP_057783172.1

573 aa

286

573

bZIP_2

bZIP_1

PF07716 bZIP_2 417-469 aa PF00170 bZIP_1 420-478 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783171.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	417	469	1.4e-08	35.4	Basic region leucine zipper
`XP_057783171.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	420	478	6.7e-10	39.6	bZIP transcription factor
`XP_057783172.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	417	469	1.4e-08	35.4	Basic region leucine zipper
`XP_057783172.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	420	478	6.7e-10	39.6	bZIP transcription factor

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927189.1
TATGCGTCTGCACTCTGCACATATATATACTAACTTGTAGTAATAATCAACGTCTACTTCAACCCAAAAATGCGGCGGATAAACTCTTGCTGAACCACCGCCGTGAAGCAATGTCAGGGTTTTGCGATCTCAGCTTCGATCCATAAAGTGTATGATTAAGTAAAAGGTAGTTTGAACTTGAAGAAATGGGAGGTGATAATGAGGAAGATAATGGTGAGACTATGCAGAGACTCCAGTCATCATTTGGAACTTCATCATCT...

XM_057927188.1
GAGGCAGTAGTGGAGCGATAGCATTAGCACTATTTATTCACGAATCTGTGTAAATATAGTAAACTTGGATTTTTAACTTATTTATTTATGTATATCTATATGTATGCGTCTGCACTCTGCACATATATATACTAACTTGTAATAATCAACGTCTACTTCAACCCAAAAATGCGGCGGATAAACTCTTGCTGAACCACCGCCGTGAAGCAATGTCAGGGTTTTGCGATCTCAGCTTCGATCCATAAAGTGTATGATTAAGT...

CDS

2 records

下载 CDS FASTA

LOC131001023
ATGGGAGGTGATAATGAGGAAGATAATGGTGAGACTATGCAGAGACTCCAGTCATCATTTGGAACTTCATCATCTTCGCTTCATACACAGCACCACTCTTTTCAACTGAATCAATCAAGTATACCTCAACTACACATGCCGCAATTTCGCGGTCAGATTCGGCAACCGTCGCCTAATTTGTGCGGGGAAAACGGTGGAAAAAGGGTGGGCATTCCGCCGTCTCATCCACAAATTCCTCCAATCTCGCCTTATTCGCAGAT...

Protein

2 records

下载 Protein FASTA

XP_057783171.1
MGGDNEEDNGETMQRLQSSFGTSSSSLHTQHHSFQLNQSSIPQLHMPQFRGQIRQPSPNLCGENGGKRVGIPPSHPQIPPISPYSQIPFNRAGNQQNFVTSPGPSHARSLSQPAFFAVDSLPPLVPSPYRESTPDQVSTDVAMEERGGGGGSHSMLPPSPFTRGTMSRVGESLPPRKAHRRSNSDIPFGFSSILQSSPPLIPLRSPGAVDRLGSARENSGAQPVQLVKKESSWEKVEESAEGMGERKYEGEVVDDLFSAY...

XP_057783172.1
MGGDNEEDNGETMQRLQSSFGTSSSSLHTQHHSFQLNQSSIPQLHMPQFRGQIRQPSPNLCGENGGKRVGIPPSHPQIPPISPYSQIPFNRAGNQQNFVTSPGPSHARSLSQPAFFAVDSLPPLVPSPYRESTPDQVSTDVAMEERGGGGGSHSMLPPSPFTRGTMSRVGESLPPRKAHRRSNSDIPFGFSSILQSSPPLIPLRSPGAVDRLGSARENSGAQPVQLVKKESSWEKVEESAEGMGERKYEGEVVDDLFSAY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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