Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001479`

染色体: Chr08 坐标: 11925296-11927874 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001479`
名称	SmilChr08G001479
描述	protein BASIC PENTACYSTEINE4-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	11925296 - 11927874 / `-`

ID 对照

NCBI Gene ID	`LOC131001025`
GeneID	`131001025`
locus_tag	`-`
NCBI Name	`LOC131001025`
原始查询	`SmilChr08G001479`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein BASIC PENTACYSTEINE4-like
产物	protein BASIC PENTACYSTEINE4-like
Arabidopsis	`AT2G21240` (BPC4) basic pentacysteine 4 [Source:NCBI gene (formerly Entrezgene);Acc:816663] identity=53.3; qcov=1.06; evalue=2.02e-107; confidence=high
Rice	`Os06g0130600` - identity=47.5; qcov=1.13; evalue=9.84e-90; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0009723 (response to ethylene); GO:0043565 (sequence-specific DNA binding)
KEGG	-
Pfam	PF06217 (GAGA_bind)
InterPro	-
eggNOG	-
NR	GeneID:131001025

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783173.1`
2	Nucleoplasm	核质	0.40000	`XP_057783175.1`
3	Nuclear body	核内小体	0.20000	`XP_057783173.1`
4	Chromosome	染色体	0.00000	`XP_057783175.1`
5	Centromere	着丝粒	0.00000	`XP_057783175.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:11925626`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr8:11925901`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr8:11925939`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B19,C64,C66
`Chr8:11925946`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B136,B29,B45,B62,B77
`Chr8:11926022`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B100,B19,C64,C66
`Chr8:11926023`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B100,B19,C64,C66
`Chr8:11926033`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B100,B19,B30,C64,C66
`Chr8:11926189`	`G`	`GTC`	2bp_insertion	frameshift_variant	6	B100,B19,B78,C28,C64,C66
`Chr8:11926190`	`CAG`	`C`	2bp_deletion	frameshift_variant	6	B100,B19,B78,C28,C64,C66
`Chr8:11926193`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr8:11926309`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,B40,C69
`Chr8:11926342`	`C`	`T`	EMS_canonical_SNV	stop_gained	103	A1,A14,A16,A2,A20,A21,A22,A23,A25,A3,A8,A9,B1,B100,B101,B102,B105,B108,B113,B120,B121,B127,B130,B133,B134,B137,B139,B14,B140,B15,B16,B23,B27,B31,B35,B40,B43,B50,B51,B52,B58,B62,B63,B67,B68,B69,B7,B70,B72,B74,B77,B82,B84,B85,B89,B9,B91,B94,B95,B96,C1,C13,C14,C17,C18,C19,C2,C20,C25,C27,C3,C30,C33,C4,C40,C41,C43,C45,C47,C49,C50,C51,C52,C53,C56,C58,C61,C62,C65,C68,C69,C74,C76,C78,C79,C8,C81,C84,C85,C9,D2,D3,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783173.1

304 aa

152

304

GAGA_bind

PF06217 GAGA_bind 25-304 aa

XP_057783174.1

304 aa

152

304

GAGA_bind

PF06217 GAGA_bind 25-304 aa

XP_057783175.1

297 aa

148

297

GAGA_bind

PF06217 GAGA_bind 1-297 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783173.1`	Pfam	`PF06217`	GAGA_bind	Domain	25	304	1.2e-95	321.7	GAGA binding protein-like family
`XP_057783174.1`	Pfam	`PF06217`	GAGA_bind	Domain	25	304	1.2e-95	321.7	GAGA binding protein-like family
`XP_057783175.1`	Pfam	`PF06217`	GAGA_bind	Domain	1	297	1.4e-97	328.1	GAGA binding protein-like family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057927191.1
ATTTATTTATGTATATATCTATATGTATGCGTCTGCACTCTGCACATATATATACTAACTTGTAGTAATAATCAACGTCTACTTCAACCCAAAAATGCGGCGGATAAACTCTTGCTGAACCACCGCCGTGAAGCAATGTCAGGTGCAGGAGAATTCTTGACCTCAACACAATATATAACTTTCAAGCATTAGGTGAGTCACAAGATGGATGAAAGCGGACGAGAGAACAGAAGACATAGAATGGATTACCACAAAGTGCC...

XM_057927190.1
TTTATTTATGTATATATCTATATGTATGCGTCTGCACTCTGCACATATATATACTAACTTGTAGTAATAATCAACGTCTACTTCAACCCAAAAATGCGGCGGATAAACTCTTGCTGAACCACCGCCGTGAAGCAATGTCAGGGAGAATTCTTGACCTCAACACAATATATAACTTTCAAGCATTAGGTGAGTCACAAGATGGATGAAAGCGGACGAGAGAACAGAAGACATAGAATGGATTACCACAAAGTGCCACAGTT...

CDS

3 records

下载 CDS FASTA

LOC131001025
ATGGATGAAAGCGGACGAGAGAACAGAAGACATAGAATGGATTACCACAAAGTGCCACAGTGGAATGTGATGCCCCAGTACCAGATTAAGGAACCAAATGCTTTCCAAATGAATGCCAAGCTCGTGATGCTCTGCAATGAAAGGGATGATGCAATAAGAGAGCGGGACAGAGCACTTACTGAGAAGAAGTTGGCATTGGATGAAAGAGACGCTGCTATGAAGCAACTAGACGCAGCAATCATGGAGCGGGATGATGCCCT...

LOC131001025
ATGAAAGCGGACGAGAGAACAGAAGACATAGAATGGATTACCACAAAGTGCCACAGTTTCTTTGTTTCAATACGATTGCAGTGGAATGTGATGCCCCAGTACCAGATTAAGGAACCAAATGCTTTCCAAATGAATGCCAAGCTCGTGATGCTCTGCAATGAAAGGGATGATGCAATAAGAGAGCGGGACAGAGCACTTACTGAGAAGAAGTTGGCATTGGATGAAAGAGACGCTGCTATGAAGCAACTAGACGCAGCAAT...

Protein

3 records

下载 Protein FASTA

XP_057783173.1
MKADERTEDIEWITTKCHSFFVSIRLQWNVMPQYQIKEPNAFQMNAKLVMLCNERDDAIRERDRALTEKKLALDERDAAMKQLDAAIMERDDALRERDNAIAALQFHESTVNPLLSGGVRGSKRTNHHPNSMQSEDCIHDHDALPVSHVPHEAPLSKKGTRSKTNKDAQTRSGRSPKKVKKIGEDLNRSKAEWDAQDLSSMSQIMFDESSMPVPVCSCTGVPRQCYKWGNGGWQSSCCTTSLSLYPLPQMPNKRHARMGG...

XP_057783174.1
MKADERTEDIEWITTKCHSFFVSIRLQWNVMPQYQIKEPNAFQMNAKLVMLCNERDDAIRERDRALTEKKLALDERDAAMKQLDAAIMERDDALRERDNAIAALQFHESTVNPLLSGGVRGSKRTNHHPNSMQSEDCIHDHDALPVSHVPHEAPLSKKGTRSKTNKDAQTRSGRSPKKVKKIGEDLNRSKAEWDAQDLSSMSQIMFDESSMPVPVCSCTGVPRQCYKWGNGGWQSSCCTTSLSLYPLPQMPNKRHARMGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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