Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001482`

染色体: Chr08 坐标: 11946567-11952822 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001482`
名称	SmilChr08G001482
描述	uncharacterized SmilChr08G001482
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	11946567 - 11952822 / `+`

ID 对照

NCBI Gene ID	`LOC131001030`
GeneID	`131001030`
locus_tag	`-`
NCBI Name	`LOC131001030`
原始查询	`SmilChr08G001482`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os08g0106900; species=rice; confidence=medium
产物	hit=Os08g0106900; species=rice; confidence=medium
Arabidopsis	`AT5G41980` (AT5G41980) nuclease [Source:NCBI gene (formerly Entrezgene);Acc:834203] identity=36.8; qcov=0.844; evalue=4.83e-66; confidence=medium
Rice	`Os08g0106900` - identity=38.9; qcov=1.01; evalue=1.25e-85; confidence=medium
GO	-
KEGG	-
Pfam	PF01609 (DDE_Tnp_1); PF04827 (Plant_tran); PF13359 (DDE_Tnp_4); PF26138 (DUF8040)
InterPro	-
eggNOG	-
NR	GeneID:131001030

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783182.1`
2	Chromosome	染色体	0.40000	`XP_057783184.1`
3	Telomere	端粒	0.20000	`XP_057783182.1`
4	Centromere	着丝粒	0.00000	`XP_057783182.1`
5	Chromatin	染色质	0.00000	`XP_057783182.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:11948032`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B106,B118,B74
`Chr8:11948033`	`C`	`CAA`	2bp_insertion	frameshift_variant	1	C65
`Chr8:11948033`	`C`	`CAA`	2bp_insertion	CDS_variant	1	C65
`Chr8:11948051`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr8:11948170`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:11948332`	`T`	`TA`	1bp_insertion	frameshift_variant	4	B1,C12,C53,C81
`Chr8:11948332`	`T`	`TA`	1bp_insertion	CDS_variant	4	B1,C12,C53,C81
`Chr8:11948341`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C15,C51
`Chr8:11948362`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr8:11948367`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr8:11948455`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr8:11948482`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783182.1

469 aa

234

469

DUF8040

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 65-150 aa PF01609 DDE_Tnp_1 174-323 aa PF13359 DDE_Tnp_4 181-321 aa

XP_057783183.1

469 aa

234

469

DUF8040

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 65-150 aa PF01609 DDE_Tnp_1 174-323 aa PF13359 DDE_Tnp_4 181-321 aa

XP_057783184.1

403 aa

202

403

DUF8040

Plant_tran

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 65-150 aa PF04827 Plant_tran 172-344 aa PF01609 DDE_Tnp_1 174-341 aa PF13359 DDE_Tnp_4 181-342 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783182.1`	Pfam	`PF26138`	DUF8040	Domain	65	150	8e-22	77.6	Domain of unknown function (DUF8040)
`XP_057783182.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	174	323	1.7e-08	35.2	Transposase DDE domain
`XP_057783182.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	181	321	3.5e-22	79.4	DDE superfamily endonuclease
`XP_057783183.1`	Pfam	`PF26138`	DUF8040	Domain	65	150	8e-22	77.6	Domain of unknown function (DUF8040)
`XP_057783183.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	174	323	1.7e-08	35.2	Transposase DDE domain
`XP_057783183.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	181	321	3.5e-22	79.4	DDE superfamily endonuclease
`XP_057783184.1`	Pfam	`PF26138`	DUF8040	Domain	65	150	5.7e-22	78.1	Domain of unknown function (DUF8040)
`XP_057783184.1`	Pfam	`PF04827`	Plant_tran	Family	172	344	9.5e-07	29.4	Plant transposon protein
`XP_057783184.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	174	341	1e-11	45.7	Transposase DDE domain
`XP_057783184.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	181	342	2.6e-24	86.3	DDE superfamily endonuclease

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057927201.1
ACATAATTAATAGCCGCGGCCCGCTACTAACACAAAGCCCGACTCAATATCACTGTGCCGCTGAACTAATTTAACCCACGCCCCCCCCCCCCCCAAGTTTAATAAGCTGCTATGAACAGTAACTCGACATTATATTGAAAGTTTACCTTTTTATCCCTGAAATACTTAAAATCTAGCCGCACTTGCAAATCCCGCTCCATTGAAAGGCATCTCCTGCGAGAGAAATTAGGAGGCGCAGCAAAACTGAGCATCGAATTTCT...

XM_057927200.1
CCCGACTCAATATCACTGTGCCGCTGAACTAATTTAACCCACGCCCCCCCCCCCCCCAAGTTTAATAAGCTGCTATGAACAGTAACTCGACATTATATTGAAAGTTTACCTTTTTATCCCTGAAATACTTAAAATCTAGCCGCACTTGCAAATCCCGCTCCATTGAAAGGCATCTCCTGCGAGAGAAATTAGGAGGCGCAGCAAAACTGAGCATCGAATTTCTTCTGCAGATCCATTGGAAGATTCGATCTGTCGTCGTT...

CDS

3 records

下载 CDS FASTA

LOC131001030
ATGCCGATTGACGATGATACCACTGTGTGCATATATCTTCTGATGGAAGAGCTTTTGCTGCAAAACATAATTTTAATACTGGTTACATATCACATTATGGCTAGATTGAGATCACGTAAACGAAAGAGAACTAATAATGTTGCATCTTTTGGAATGATTGAACGTGTTCCCGATCAAGTTATGCATATGAATAGACTCGTAGGGGTTAGCGATATTGATTGCCTAGCAAACCTAAGAATGGACCGCAATACATTCGGTAG...

Protein

3 records

下载 Protein FASTA

XP_057783182.1
MPIDDDTTVCIYLLMEELLLQNIILILVTYHIMARLRSRKRKRTNNVASFGMIERVPDQVMHMNRLVGVSDIDCLANLRMDRNTFGRLCIVLRDLGGLTDGRYIKVEEQVAIFLSVLAHHKKNRVVRFDFWRSGQTVSKFVHIVLKAILKLHTVLLVKPMPVPDDCMDNRWRWFKGCLGALDGTYINVMVSNADKPRYRTRKGQISTNTLAVCDRNMKFVYVLPGWEGSAADSRILRDALTRVNGLRVPKGNYYLVDNGY...

XP_057783183.1
MPIDDDTTVCIYLLMEELLLQNIILILVTYHIMARLRSRKRKRTNNVASFGMIERVPDQVMHMNRLVGVSDIDCLANLRMDRNTFGRLCIVLRDLGGLTDGRYIKVEEQVAIFLSVLAHHKKNRVVRFDFWRSGQTVSKFVHIVLKAILKLHTVLLVKPMPVPDDCMDNRWRWFKGCLGALDGTYINVMVSNADKPRYRTRKGQISTNTLAVCDRNMKFVYVLPGWEGSAADSRILRDALTRVNGLRVPKGNYYLVDNGY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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