Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001521`

染色体: Chr08 坐标: 12360556-12366000 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001521`
名称	SmilChr08G001521
描述	uncharacterized SmilChr08G001521
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	12360556 - 12366000 / `-`

ID 对照

NCBI Gene ID	`LOC131001064`
GeneID	`131001064`
locus_tag	`-`
NCBI Name	`LOC131001064`
原始查询	`SmilChr08G001521`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Survival protein SurE-like phosphatase/nucleotidase [Source:NCBI gene (formerly Entrezgene);Acc:827151]; symbol=AT4G14930; hit=AT4G14930; species=arabidopsis; confidence=high
产物	Survival protein SurE-like phosphatase/nucleotidase [Source:NCBI gene (formerly Entrezgene);Acc:827151]; symbol=AT4G14930; hit=AT4G14930; species=arabidopsis; confidence=high
Arabidopsis	`AT4G14930` (AT4G14930) Survival protein SurE-like phosphatase/nucleotidase [Source:NCBI gene (formerly Entrezgene);Acc:827151] identity=59.4; qcov=0.973; evalue=1.04e-106; confidence=high
Rice	`Os07g0204500` - identity=53; qcov=0.954; evalue=6.52e-90; confidence=high
GO	GO:0005829 (cytosol); GO:0008252 (nucleotidase activity)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00240 (Pyrimidine metabolism - Salvia miltiorrhiza (redroot sage)); smil00760 (Nicotinate and nicotinamide metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF01975 (SurE)
InterPro	-
eggNOG	-
NR	GeneID:131001064

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057783229.1`
2	Chloroplast	叶绿体	0.80000	`XP_057783225.1`
3	Nucleus	细胞核	0.60000	`XP_057783229.1`
4	Peroxisome	过氧化物酶体	0.20000	`XP_057783225.1`
5	Chromosome	染色体	0.00000	`XP_057783229.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:12362493`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr8:12365476`	`C`	`CA`	1bp_insertion	frameshift_variant	1	B1
`Chr8:12365476`	`C`	`CA`	1bp_insertion	CDS_variant	1	B1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783225.1

361 aa

180

361

SurE

PF01975 SurE 73-265 aa

XP_057783226.1

361 aa

180

361

SurE

PF01975 SurE 73-265 aa

XP_057783227.1

361 aa

180

361

SurE

PF01975 SurE 73-265 aa

XP_057783228.1

361 aa

180

361

SurE

PF01975 SurE 73-265 aa

XP_057783229.1

263 aa

132

263

SurE

PF01975 SurE 10-167 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783225.1`	Pfam	`PF01975`	SurE	Domain	73	265	1.8e-54	185.1	Survival protein SurE
`XP_057783226.1`	Pfam	`PF01975`	SurE	Domain	73	265	1.8e-54	185.1	Survival protein SurE
`XP_057783227.1`	Pfam	`PF01975`	SurE	Domain	73	265	1.8e-54	185.1	Survival protein SurE
`XP_057783228.1`	Pfam	`PF01975`	SurE	Domain	73	265	1.8e-54	185.1	Survival protein SurE
`XP_057783229.1`	Pfam	`PF01975`	SurE	Domain	10	167	7.2e-39	134.2	Survival protein SurE

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057927245.1
GAATTCCTTTTTTTTTTTTTAAATGTTTCAATTTTTATAATTTAATTAAAGTCTAAATATTCAAAATTTTAAATTATTACTACTAAATTTTAAAATGAAATAATAAAAAGGATATTTTAGTAAAACTGTTTATAATTAATATATTATTATTTTTGTAGCTACAATTAACTTTTACTTAAGTAAAATGTCTATTTTAATATTTGCCTCTAAATTTAATGCAGATGATTAATAATGTACAAAAATTAAGTGCAGCATACACG...

XM_057927243.1
TTGTTGGCCGTTGCGGGCAGAAAGCAATTTCATACATGAATCTAGGAGATTAGCGTAAAGTTGGAGTTTTATTTCATTAATTTTTGAGTCGACAAATGCAAAAATTGAGCTTTGTACCCAAATATTTTTCTTTTATAAGAGGAAGAAATACGACAAAGTTGCGGAGCAGGGGTAGTTTGGGTAGCTTGAGTAGCATTGTAAATGTACGTTTTTGCCGGCAAAAAGCAAAGTCACAATTAGGAAAAGGCAAAAGGGAGAAA...

CDS

5 records

下载 CDS FASTA

LOC131001064
ATGCAAAAATTGAGCTTTGTACCCAAATATTTTTCTTTTATAAGAGGAAGAAATACGACAAAGTTGCGGAGCAGGGGTAGTTTGGGTAGCTTGAGTAGCATTGTAAATGTACGTTTTTGCCGGCAAAAAGCAAAGTCACAATTAGGAAAAGGCAAAAGGGAGAAAATTGTAAAATCAATTGACAAAATGAGCAGCGGCGGCGGCGATCGTCCGACGGTGATGGTCACGAACGACGACGGAATCGATGCTCCAGGAATTCG...

Protein

5 records

下载 Protein FASTA

XP_057783225.1
MQKLSFVPKYFSFIRGRNTTKLRSRGSLGSLSSIVNVRFCRQKAKSQLGKGKREKIVKSIDKMSSGGGDRPTVMVTNDDGIDAPGIRALVHVLVSSNRFNVYVCAPDSEKSAVSHSITWRNALIAKPVEIDGTVAFAVSGTPADCTSLGISKALFPSVPDLVISGINMGSNCGYHIIYSGTVAGAREAFFNGIASISISYDWVGGKSTVNDFKLAAEVCLPIICGMLVEIKKKTYPQNCFLNVDVPTDVVNHKGYRLTNQ...

XP_057783226.1
MQKLSFVPKYFSFIRGRNTTKLRSRGSLGSLSSIVNVRFCRQKAKSQLGKGKREKIVKSIDKMSSGGGDRPTVMVTNDDGIDAPGIRALVHVLVSSNRFNVYVCAPDSEKSAVSHSITWRNALIAKPVEIDGTVAFAVSGTPADCTSLGISKALFPSVPDLVISGINMGSNCGYHIIYSGTVAGAREAFFNGIASISISYDWVGGKSTVNDFKLAAEVCLPIICGMLVEIKKKTYPQNCFLNVDVPTDVVNHKGYRLTNQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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