当前解析结果
SmilChr08G001523| 统一新 Gene ID | SmilChr08G001523 |
|---|---|
| 名称 | SmilChr08G001523 |
| 描述 | increased DNA methylation 1 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 12385188 - 12392450 / + |
| NCBI Gene ID | LOC131001066 |
|---|---|
| GeneID | 131001066 |
| locus_tag | - |
| NCBI Name | LOC131001066 |
| 原始查询 | SmilChr08G001523 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | increased DNA methylation 1 |
| 产物 | increased DNA methylation 1 |
| Arabidopsis | AT4G14920 (AT4G14920)Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:827150] identity=44.9; qcov=0.91; evalue=0; confidence=medium |
| Rice | Os03g0747600- identity=43.1; qcov=0.627; evalue=0; confidence=medium |
| GO | GO:0003714 (transcription corepressor activity); GO:0045892 (negative regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00628 (PHD); PF16135 (TDBD); PF22970 (DUF7028); PF23209 (IDM1_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001066 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057783230.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057783230.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057783230.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057783230.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057783230.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:12385731 |
TA |
T |
1bp_deletion | frameshift_variant | 2 | B119,B25 |
Chr8:12385731 |
TA |
T |
1bp_deletion | CDS_variant | 2 | B119,B25 |
Chr8:12385760 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr8:12386118 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,C14 |
Chr8:12386145 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr8:12386290 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C58,C85 |
Chr8:12386299 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr8:12386405 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A13,A4,B124,B95 |
Chr8:12386410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr8:12386414 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B140,C34,C82 |
Chr8:12386642 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B103,B61,C23 |
Chr8:12387150 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A24,B1,B104,B27,B72 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783230.1PF22970
DUF7028 352-412 aa
PF16135
TDBD 605-655 aa
PF00628
PHD 683-722 aa
PF23209
IDM1_C 839-978 aa
XP_057783231.1PF22970
DUF7028 352-412 aa
PF16135
TDBD 605-655 aa
PF00628
PHD 683-722 aa
PF23209
IDM1_C 839-978 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783230.1 |
Pfam | PF22970 |
DUF7028 | Domain | 352 | 412 | 5.6e-14 | 52.6 | Domain of unknown function (DUF7028) |
XP_057783230.1 |
Pfam | PF16135 |
TDBD | Domain | 605 | 655 | 8e-23 | 80.9 | Tify domain binding domain |
XP_057783230.1 |
Pfam | PF00628 |
PHD | Domain | 683 | 722 | 7.1e-07 | 29.9 | PHD-finger |
XP_057783230.1 |
Pfam | PF23209 |
IDM1_C | Domain | 839 | 978 | 1e-58 | 198.1 | Increased DNA methylation 1, C-terminal domain |
XP_057783231.1 |
Pfam | PF22970 |
DUF7028 | Domain | 352 | 412 | 5.8e-14 | 52.5 | Domain of unknown function (DUF7028) |
XP_057783231.1 |
Pfam | PF16135 |
TDBD | Domain | 605 | 655 | 6.5e-23 | 81.2 | Tify domain binding domain |
XP_057783231.1 |
Pfam | PF00628 |
PHD | Domain | 683 | 722 | 6.1e-07 | 30.1 | PHD-finger |
XP_057783231.1 |
Pfam | PF23209 |
IDM1_C | Domain | 839 | 978 | 8.6e-59 | 198.4 | Increased DNA methylation 1, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。