当前解析结果
SmilChr08G001530| 统一新 Gene ID | SmilChr08G001530 |
|---|---|
| 名称 | SmilChr08G001530 |
| 描述 | fanconi-associated nuclease 1 homolog |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 12446943 - 12455016 / + |
| NCBI Gene ID | LOC131001073 |
|---|---|
| GeneID | 131001073 |
| locus_tag | - |
| NCBI Name | LOC131001073 |
| 原始查询 | SmilChr08G001530 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | fanconi-associated nuclease 1 homolog |
| 产物 | fanconi-associated nuclease 1 homolog |
| Arabidopsis | AT1G48360 (AT1G48360)zinc ion binding/nucleic acid binding/hydrolase [Source:NCBI gene (formerly Entrezgene);Acc:841256] identity=49; qcov=1.02; evalue=0; confidence=high |
| Rice | Os06g0171800- identity=46.9; qcov=1.05; evalue=0; confidence=high |
| GO | GO:0005634 (nucleus); GO:0008270 (zinc ion binding); GO:0008409 (5'-3' exonuclease activity); GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides); GO:0017108 (5'-flap endonuclease activity); GO:0036297 (interstrand cross-link repair); GO:0070336 (flap-structured DNA binding) |
| KEGG | smil03460 (Fanconi anemia pathway - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF08774 (VRR_NUC); PF08797 (HIRAN); PF21170 (FAN1_TPR); PF21315 (FAN1_HTH) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001073 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057783243.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057783243.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057783243.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057783243.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057783243.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:12447079 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,C20,C48 |
Chr8:12447101 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A15,B12,B13 |
Chr8:12447312 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:12447328 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B12 |
Chr8:12447328 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B12 |
Chr8:12447352 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:12447712 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A15,B12 |
Chr8:12448956 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr8:12449990 |
TA |
T |
1bp_deletion | frameshift_variant | 2 | B37,D8 |
Chr8:12449990 |
TA |
T |
1bp_deletion | CDS_variant | 2 | B37,D8 |
Chr8:12450018 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B111,B21,B79,C54 |
Chr8:12451823 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B111,B121,B21,B79,C54 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783243.1PF08797
HIRAN 214-300 aa
PF21315
FAN1_HTH 344-422 aa
PF21170
FAN1_TPR 552-701 aa
PF08774
VRR_NUC 829-943 aa
XP_057783244.1PF08797
HIRAN 214-300 aa
PF21170
FAN1_TPR 531-680 aa
PF08774
VRR_NUC 808-922 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783243.1 |
Pfam | PF08797 |
HIRAN | Domain | 214 | 300 | 8.1e-16 | 58.3 | HIRAN domain |
XP_057783243.1 |
Pfam | PF21315 |
FAN1_HTH | Domain | 344 | 422 | 5.2e-17 | 62.2 | FAN1, HTH domain |
XP_057783243.1 |
Pfam | PF21170 |
FAN1_TPR | Repeat | 552 | 701 | 1.5e-17 | 64.7 | Fanconi-associated nuclease 1, TPR domain |
XP_057783243.1 |
Pfam | PF08774 |
VRR_NUC | Domain | 829 | 943 | 2.1e-33 | 115.5 | VRR-NUC domain |
XP_057783244.1 |
Pfam | PF08797 |
HIRAN | Domain | 214 | 300 | 7.9e-16 | 58.4 | HIRAN domain |
XP_057783244.1 |
Pfam | PF21170 |
FAN1_TPR | Repeat | 531 | 680 | 1.4e-17 | 64.7 | Fanconi-associated nuclease 1, TPR domain |
XP_057783244.1 |
Pfam | PF08774 |
VRR_NUC | Domain | 808 | 922 | 2.1e-33 | 115.5 | VRR-NUC domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。