Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G001532

染色体: Chr08 坐标: 12467943-12470195 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G001532
名称SmilChr08G001532
描述prefoldin subunit 2-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向12467943 - 12470195 / +

ID 对照

NCBI Gene IDLOC131001077
GeneID131001077
locus_tag-
NCBI NameLOC131001077
原始查询SmilChr08G001532

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述prefoldin subunit 2-like
产物prefoldin subunit 2-like
ArabidopsisAT3G22480 (PDF2)
prefoldin 2 [Source:NCBI gene (formerly Entrezgene);Acc:821819]
identity=69.3; qcov=0.966; evalue=2.76e-66; confidence=high
RiceOs12g0485800
-
identity=77.5; qcov=0.952; evalue=6.62e-74; confidence=high
GOGO:0005737 (cytoplasm); GO:0006457 (protein folding); GO:0016272 (prefoldin complex); GO:0044183 (protein folding chaperone); GO:0051082 (GO:0051082)
KEGG-
PfamPF01920 (Prefoldin_2)
InterPro-
eggNOG-
NRGeneID:131001077

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057783253.1
2 Nucleus 细胞核 0.80000 XP_057783253.1
3 Cytosol 细胞质基质 0.60000 XP_057783253.1
4 Chromosome 染色体 0.00000 XP_057783253.1
5 Centromere 着丝粒 0.00000 XP_057783253.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:12469677 C T EMS_canonical_SNV CDS_variant 2 B112,B124
Chr8:12469890 C T EMS_canonical_SNV CDS_variant 1 B104
Chr8:12469965 G A EMS_canonical_SNV CDS_variant 2 B26,C77
Chr8:12469988 GC G 1bp_deletion frameshift_variant 1 B108
Chr8:12469988 GC G 1bp_deletion CDS_variant 1 B108

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057783253.1
145 aa
N
1
72
145
Prefoldin_2
C
PF01920 Prefoldin_2 15-118 aa
XP_057783254.1
145 aa
N
1
72
145
Prefoldin_2
C
PF01920 Prefoldin_2 15-118 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057783253.1 Pfam PF01920 Prefoldin_2 Coiled-coil 15 118 1.1e-25 90.4 Prefoldin subunit
XP_057783254.1 Pfam PF01920 Prefoldin_2 Coiled-coil 15 118 1.1e-25 90.4 Prefoldin subunit

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057927271.1
ATATTTACAACAGAATTGCTCACAATTAAAAGTGCGGAAAGATGCTCAGTAGATTTATTTCGTATTTCTCTACTTGAAGCTCTCCTCCCTCCCCGTTTCACTTCGACTCCACCTCGCCGCCGTGTTTGGGAAAAGTAGGCTAAAATCTCGATTTCAACTCAAGGTGACTGAACCTTGTCGTTGCTTCGACTACTGGGCAATACTGACTCAAAGTAGCATTCTAGTGCAGAGCTAAGATCACTTTGATTTTTGTTATGGTG...
XM_057927270.1
ATATTTACAACAGAATTGCTCACAATTAAAAGTGCGGAAAGATGCTCAGTAGATTTATTTCGTATTTCTCTACTTGAAGCTCTCCTCCCTCCCCGTTTCACTTCGACTCCACCTCGCCGCCGTGTTTGGGAAAAGTAGGCTAAAATCTCGATTTCAACTCAAGATCAATAGGATGGCCAGGGCTGAAGGTGATATCAAAGAACCGATGAATGAGCAAGCCATTGCAAATATATATGCTTCAATGAGGAATGAAATCAACC...

CDS

2 records

下载 CDS FASTA
LOC131001077
ATGGCCAGGGCTGAAGGTGATATCAAAGAACCGATGAATGAGCAAGCCATTGCAAATATATATGCTTCAATGAGGAATGAAATCAACCAAATCTATTCCAAGATCACCGAGCTGGAAATGGAGGTCAGCGAGCACTCCCTCGTGATCAACGCCATAAAACCACTTGATCCATCAAGGCGATGCTACCGGATGATTGGAGGTGTTCTTGTTGAGAGAACAATCAGAGAAGTTCTGCCAGCTGTGCAGAGAAATAAGGAGGG...
LOC131001077
ATGGCCAGGGCTGAAGGTGATATCAAAGAACCGATGAATGAGCAAGCCATTGCAAATATATATGCTTCAATGAGGAATGAAATCAACCAAATCTATTCCAAGATCACCGAGCTGGAAATGGAGGTCAGCGAGCACTCCCTCGTGATCAACGCCATAAAACCACTTGATCCATCAAGGCGATGCTACCGGATGATTGGAGGTGTTCTTGTTGAGAGAACAATCAGAGAAGTTCTGCCAGCTGTGCAGAGAAATAAGGAGGG...

Protein

2 records

下载 Protein FASTA
XP_057783253.1
MARAEGDIKEPMNEQAIANIYASMRNEINQIYSKITELEMEVSEHSLVINAIKPLDPSRRCYRMIGGVLVERTIREVLPAVQRNKEGIEEVIARLNEASEKKKKDLAEFEAKYKIRIRKGDGEMKDESKKEGNAQGVLVGPAGSN
XP_057783254.1
MARAEGDIKEPMNEQAIANIYASMRNEINQIYSKITELEMEVSEHSLVINAIKPLDPSRRCYRMIGGVLVERTIREVLPAVQRNKEGIEEVIARLNEASEKKKKDLAEFEAKYKIRIRKGDGEMKDESKKEGNAQGVLVGPAGSN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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