当前解析结果
SmilChr08G001544| 统一新 Gene ID | SmilChr08G001544 |
|---|---|
| 名称 | SmilChr08G001544 |
| 描述 | uncharacterized SmilChr08G001544 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 12645277 - 12646839 / + |
| NCBI Gene ID | LOC130998089 |
|---|---|
| GeneID | 130998089 |
| locus_tag | - |
| NCBI Name | LOC130998089 |
| 原始查询 | SmilChr08G001544 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0156200; species=rice; confidence=low |
| 产物 | hit=Os12g0156200; species=rice; confidence=low |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=25.3; qcov=0.358; evalue=6.53e-12; confidence=low |
| Rice | Os12g0156200- identity=27.9; qcov=0.379; evalue=4.31e-21; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998089 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057779505.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057779505.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057779505.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779505.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779505.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:12645313 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,C73 |
Chr8:12645319 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:12645368 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B56,B96,C73,C86 |
Chr8:12645411 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr8:12645432 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B56,B96,C73,C86 |
Chr8:12645439 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B56,B96,C73,C86 |
Chr8:12645459 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B56,B96,C73,C86 |
Chr8:12645472 |
C |
T |
EMS_canonical_SNV | stop_gained | 30 | A13,A14,A15,B113,B117,B126,B135,B30,B34,B36,B81,B85,B98,C10,C15,C25,C30,C32,C38,C40,C56,C6,C62,C63,C67,C68,C86,C87,D4,D5 |
Chr8:12645524 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr8:12645533 |
C |
CGT |
2bp_insertion | frameshift_variant | 1 | B86 |
Chr8:12645533 |
C |
CGT |
2bp_insertion | CDS_variant | 1 | B86 |
Chr8:12645536 |
CGG |
C |
2bp_deletion | frameshift_variant | 2 | B56,B96 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。