当前解析结果
SmilChr08G001547| 统一新 Gene ID | SmilChr08G001547 |
|---|---|
| 名称 | SmilChr08G001547 |
| 描述 | polygalacturonase inhibitor-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 12676708 - 12677961 / + |
| NCBI Gene ID | LOC131001091 |
|---|---|
| GeneID | 131001091 |
| locus_tag | - |
| NCBI Name | LOC131001091 |
| 原始查询 | SmilChr08G001547 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | polygalacturonase inhibitor-like |
| 产物 | polygalacturonase inhibitor-like |
| Arabidopsis | AT5G06860 (PGIP1)polygalacturonase inhibiting protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:830577] identity=56.5; qcov=0.916; evalue=1.8e-123; confidence=high |
| Rice | Os05g0104700 (PGIP4)- identity=47.3; qcov=0.949; evalue=1.58e-91; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001091 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057783283.1 |
| 2 | Cell wall | 细胞壁 | 0.60000 | XP_057783283.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057783283.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057783283.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057783283.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:12677121 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr8:12677205 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr8:12677286 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr8:12677376 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B98,C25,C45 |
Chr8:12677413 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B27,B82,C20,C48 |
Chr8:12677442 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B1,B41,B99,C87 |
Chr8:12677491 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,C82 |
Chr8:12677496 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B128,B23,C46,D4 |
Chr8:12677499 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B105,B123,B34,D2,D6 |
Chr8:12677718 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B98,C45 |
Chr8:12677777 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr8:12677815 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B103,B51,B61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783283.1PF08263
LRRNT_2 29-66 aa
PF13516
LRR_6 144-157 aa
PF00560
LRR_1 144-166 aa
PF13855
LRR_8 144-204 aa
PF00560
LRR_1 169-190 aa
PF13516
LRR_6 193-206 aa
PF00560
LRR_1 193-215 aa
PF00560
LRR_1 263-283 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783283.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 29 | 66 | 5.8e-12 | 46.4 | Leucine rich repeat N-terminal domain |
XP_057783283.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 144 | 157 | 2.4e-12 | 46.6 | Leucine Rich repeat |
XP_057783283.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 144 | 166 | 3.8e-25 | 83.2 | Leucine Rich Repeat |
XP_057783283.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 144 | 204 | 4.3e-18 | 65.5 | Leucine rich repeat |
XP_057783283.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 169 | 190 | 3.8e-25 | 83.2 | Leucine Rich Repeat |
XP_057783283.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 193 | 206 | 2.4e-12 | 46.6 | Leucine Rich repeat |
XP_057783283.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 193 | 215 | 3.8e-25 | 83.2 | Leucine Rich Repeat |
XP_057783283.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 263 | 283 | 3.8e-25 | 83.2 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。