当前解析结果
SmilChr08G001556| 统一新 Gene ID | SmilChr08G001556 |
|---|---|
| 名称 | SmilChr08G001556 |
| 描述 | magnesium transporter MRS2-I |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 12769949 - 12774324 / - |
| NCBI Gene ID | LOC131001099 |
|---|---|
| GeneID | 131001099 |
| locus_tag | - |
| NCBI Name | LOC131001099 |
| 原始查询 | SmilChr08G001556 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | magnesium transporter MRS2-I |
| 产物 | magnesium transporter MRS2-I |
| Arabidopsis | AT5G64560 (MGT9)magnesium transporter 9 [Source:NCBI gene (formerly Entrezgene);Acc:836577] identity=78.9; qcov=0.997; evalue=0; confidence=high |
| Rice | Os03g0742400 (OsMRS2-7)- identity=86.8; qcov=0.63; evalue=7.98e-141; confidence=high |
| GO | GO:0015095 (magnesium ion transmembrane transporter activity); GO:0015693 (magnesium ion transport); GO:0016020 (membrane); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF01544 (CorA); PF22099 (MRS2-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001099 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057783301.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057783301.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057783301.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057783301.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057783301.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:12770268 |
C |
CCA |
2bp_insertion | frameshift_variant | 64 | A15,A18,A22,A4,A5,B105,B109,B112,B113,B117,B123,B125,B128,B130,B131,B132,B136,B137,B14,B15,B2,B3,B32,B34,B4,B40,B42,B43,B47,B50,B51,B53,B57,B58,B69,B70,B76,B77,B80,B84,B85,B88,B91,B94,B95,C11,C22,C24,C25,C30,C31,C37,C38,C41,C42,C5,C51,C62,C64,C66,C69,C77,C87,D11 |
Chr8:12770317 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B67,B7,C33 |
Chr8:12770328 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr8:12770332 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr8:12770449 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr8:12770496 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B74,C73 |
Chr8:12770503 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr8:12771119 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr8:12771159 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr8:12771161 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr8:12771168 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr8:12771271 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057783301.1PF22099
MRS2-like 41-236 aa
PF22099
MRS2-like 275-322 aa
PF01544
CorA 281-383 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783301.1 |
Pfam | PF22099 |
MRS2-like | Family | 41 | 236 | 6.7e-35 | 121.2 | Magnesium transporter MRS2-like |
XP_057783301.1 |
Pfam | PF22099 |
MRS2-like | Family | 275 | 322 | 6.7e-35 | 121.2 | Magnesium transporter MRS2-like |
XP_057783301.1 |
Pfam | PF01544 |
CorA | Family | 281 | 383 | 8.6e-11 | 42.4 | CorA-like Mg2+ transporter protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。