Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001565`

染色体: Chr08 坐标: 12866555-12870366 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001565`
名称	SmilChr08G001565
描述	U-box domain-containing protein 43-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	12866555 - 12870366 / `+`

ID 对照

NCBI Gene ID	`LOC131001108`
GeneID	`131001108`
locus_tag	`-`
NCBI Name	`LOC131001108`
原始查询	`SmilChr08G001565`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	U-box domain-containing protein 43-like
产物	U-box domain-containing protein 43-like
Arabidopsis	`AT1G76390` (PUB43) ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843971] identity=28.1; qcov=0.743; evalue=1.11e-41; confidence=low
Rice	`Os01g0948500` - identity=27; qcov=0.504; evalue=2.7e-37; confidence=low
GO	GO:0004842 (ubiquitin-protein transferase activity); GO:0005515 (protein binding); GO:0007166 (cell surface receptor signaling pathway); GO:0016567 (protein ubiquitination)
KEGG	-
Pfam	PF04564 (U-box)
InterPro	-
eggNOG	-
NR	GeneID:131001108

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057783316.1`
2	Cytosol	细胞质基质	0.60000	`XP_057783316.1`
3	Nucleus	细胞核	0.00000	`XP_057783316.1`
4	Chromosome	染色体	0.00000	`XP_057783316.1`
5	Centromere	着丝粒	0.00000	`XP_057783316.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:12867108`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr8:12867345`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr8:12867527`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B23
`Chr8:12867543`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C72
`Chr8:12867543`	`TC`	`T`	1bp_deletion	CDS_variant	1	C72
`Chr8:12867659`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B88,C22
`Chr8:12867847`	`AAC`	`A`	2bp_deletion	frameshift_variant	1	B131
`Chr8:12867847`	`AAC`	`A`	2bp_deletion	CDS_variant	1	B131
`Chr8:12867911`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B6,B98,C45
`Chr8:12867953`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B46,C14
`Chr8:12867962`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B66,B8
`Chr8:12867977`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B6,B98,C45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783316.1

1014 aa

507

1014

U-box

PF04564 U-box 263-328 aa

XP_057783317.1

1014 aa

507

1014

U-box

PF04564 U-box 263-328 aa

XP_057783318.1

1014 aa

507

1014

U-box

PF04564 U-box 263-328 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783316.1`	Pfam	`PF04564`	U-box	Domain	263	328	5.2e-11	43.3	U-box domain
`XP_057783317.1`	Pfam	`PF04564`	U-box	Domain	263	328	5.2e-11	43.3	U-box domain
`XP_057783318.1`	Pfam	`PF04564`	U-box	Domain	263	328	5.2e-11	43.3	U-box domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057927333.1
TGGGAAAATTCAATGGAGACAGGTGGTTAATAAAACGCGCAATGTTTTTCTTTCTAAGAAAATGAATGACAAAATCGCAGTAAAAAGACTCATTGACTTAAAAGTCAATTCAGTCTAAAGCATGCTGATTTACAAAAACATGGGATTTTTCATTTTTCATCAAAGCCTCCAAAATCCAGTATTTCGAGCTTCGTGAAGAATGGCTGAGCTTATACCGATTGGAACAATCTTGGGCGTTCTGTCTCACCAGATCATCAAGA...

XM_057927334.1
GTTAATAAAACGCGCAATGTTTTTCTTTCTAAGAAAATGAATGACAAAATCGCAGTAAAAAGACTCATTGACTTAAAAGTCAATTCAGTCTAAAGCATGCTGATTTACAAAAACATGGGATTTTTCATTTTTCATCAAAGCCTCCAAAATCCAGTATTTCGAGCTTCGTGAAGCATATATAGGTAGGAGTTGTTTCTGATAGAAAAGATGGATGCAGAATGGCTGAGCTTATACCGATTGGAACAATCTTGGGCGTTCTG...

CDS

3 records

下载 CDS FASTA

LOC131001108
ATGGCTGAGCTTATACCGATTGGAACAATCTTGGGCGTTCTGTCTCACCAGATCATCAAGATCAGCCAAGCCGCCAAGGACATCGTGTTCGAGAAGGAGAGCTTCCGTGTCCTTGTGGAGCATCTCCTCGACATCGAGCCCGTCTTGAGGGAGCTGCAGTCGCAGCAGCTGAACGACTCCCCCGCTGCAAGGCAGGCGCTCGAGTCACTCGAGACCAACGTCAAGCAGGCGCACACCTTAGTCGACAAGTACAAAGGCCG...

Protein

3 records

下载 Protein FASTA

XP_057783316.1
MAELIPIGTILGVLSHQIIKISQAAKDIVFEKESFRVLVEHLLDIEPVLRELQSQQLNDSPAARQALESLETNVKQAHTLVDKYKGRARFYLLVKCRHIVKEIQDVTREIGDSLAALSLANLEVLSGISDQVHKLQHEMQRAQFEASHARLLIVDKLNQGISDQAFDKEFANDMLKEIARAVGVPVEPSEITKELASFKREKEEAENRKERAEVFFLEQVIELLSRADAARDFEEVSNQYMQRVKVIQRYDPRKEYIEPF...

XP_057783317.1
MAELIPIGTILGVLSHQIIKISQAAKDIVFEKESFRVLVEHLLDIEPVLRELQSQQLNDSPAARQALESLETNVKQAHTLVDKYKGRARFYLLVKCRHIVKEIQDVTREIGDSLAALSLANLEVLSGISDQVHKLQHEMQRAQFEASHARLLIVDKLNQGISDQAFDKEFANDMLKEIARAVGVPVEPSEITKELASFKREKEEAENRKERAEVFFLEQVIELLSRADAARDFEEVSNQYMQRVKVIQRYDPRKEYIEPF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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