Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001570`

染色体: Chr08 坐标: 12918974-12920911 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001570`
名称	SmilChr08G001570
描述	uncharacterized SmilChr08G001570
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	12918974 - 12920911 / `+`

ID 对照

NCBI Gene ID	`LOC131001112`
GeneID	`131001112`
locus_tag	`-`
NCBI Name	`LOC131001112`
原始查询	`SmilChr08G001570`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ADP-ribosylation factor C1 [Source:NCBI gene (formerly Entrezgene);Acc:821868]; symbol=ARFC1; hit=AT3G22950; species=arabidopsis; confidence=high
产物	ADP-ribosylation factor C1 [Source:NCBI gene (formerly Entrezgene);Acc:821868]; symbol=ARFC1; hit=AT3G22950; species=arabidopsis; confidence=high
Arabidopsis	`AT3G22950` (ARFC1) ADP-ribosylation factor C1 [Source:NCBI gene (formerly Entrezgene);Acc:821868] identity=89.1; qcov=1; evalue=3.98e-123; confidence=high
Rice	`Os11g0586900` (OsARFC1) - identity=86.3; qcov=1; evalue=7.74e-119; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0005802 (trans-Golgi network); GO:0006886 (intracellular protein transport); GO:0016192 (vesicle-mediated transport); GO:1903292 (protein localization to Golgi membrane)
KEGG	-
Pfam	PF00025 (Arf); PF00071 (Ras); PF01926 (MMR_HSR1); PF04670 (Gtr1_RagA); PF08477 (Roc); PF09439 (SRPRB)
InterPro	-
eggNOG	-
NR	GeneID:131001112

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.80000	`XP_057783322.1`
2	Trans-golgi network	Trans-golgi network	0.80000	`XP_057783322.1`
3	Cytosol	细胞质基质	0.60000	`XP_057783322.1`
4	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057783322.1`
5	Endosome	内体	0.20000	`XP_057783322.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:12919408`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,B120,C61
`Chr8:12919487`	`C`	`T`	EMS_canonical_SNV	stop_gained	8	A21,B130,B133,B134,B8,B89,B9,C54
`Chr8:12920696`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr8:12920746`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B105,B118,B134,B18,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783322.1

183 aa

183

Arf

SRPRB

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 11-176 aa PF09439 SRPRB 18-143 aa PF01926 MMR_HSR1 19-122 aa PF08477 Roc 19-129 aa PF04670 Gtr1_RagA 19-139 aa PF00071 Ras 19-142 aa

XP_057783323.1

183 aa

183

Arf

SRPRB

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 11-176 aa PF09439 SRPRB 18-143 aa PF01926 MMR_HSR1 19-122 aa PF08477 Roc 19-129 aa PF04670 Gtr1_RagA 19-139 aa PF00071 Ras 19-142 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783322.1`	Pfam	`PF00025`	Arf	Domain	11	176	5.2e-67	225.4	ADP-ribosylation factor family
`XP_057783322.1`	Pfam	`PF09439`	SRPRB	Domain	18	143	4.4e-11	43.2	Signal recognition particle receptor beta subunit
`XP_057783322.1`	Pfam	`PF01926`	MMR_HSR1	Family	19	122	9.8e-06	26.4	50S ribosome-binding GTPase
`XP_057783322.1`	Pfam	`PF08477`	Roc	Domain	19	129	1.2e-13	52.0	Ras of Complex, Roc, domain of DAPkinase
`XP_057783322.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	19	139	5.4e-05	23.4	Gtr1/RagA G protein conserved region
`XP_057783322.1`	Pfam	`PF00071`	Ras	Domain	19	142	8.2e-12	45.7	Ras family
`XP_057783323.1`	Pfam	`PF00025`	Arf	Domain	11	176	5.2e-67	225.4	ADP-ribosylation factor family
`XP_057783323.1`	Pfam	`PF09439`	SRPRB	Domain	18	143	4.4e-11	43.2	Signal recognition particle receptor beta subunit
`XP_057783323.1`	Pfam	`PF01926`	MMR_HSR1	Family	19	122	9.8e-06	26.4	50S ribosome-binding GTPase
`XP_057783323.1`	Pfam	`PF08477`	Roc	Domain	19	129	1.2e-13	52.0	Ras of Complex, Roc, domain of DAPkinase
`XP_057783323.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	19	139	5.4e-05	23.4	Gtr1/RagA G protein conserved region
`XP_057783323.1`	Pfam	`PF00071`	Ras	Domain	19	142	8.2e-12	45.7	Ras family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927339.1
GATTAATTTTTCTCATTTGCCCTCCAAAAGTTACAAATATCGAATGCCGCCCACCAGCCACCACCCCACCCAAAACCCAACCCATTAAGTTTACAAAATAACCACTTTGAAAAATAAAATTAAAAATTCCAAAAGCAAAATCACTAAAACCCAAATTCGTTTCACGACATCAGATTCTCAGCATAATCCAACACCGAATCGCAGTTATCTCTCAGCATAATCGAAATTTAGGGGATCGATGGGGGCGCTGATGTCAAAGA...

XM_057927340.1
GATTAATTTTTCTCATTTGCCCTCCAAAAGTTACAAATATCGAATGCCGCCCACCAGCCACCACCCCACCCAAAACCCAACCCATTAAGTTTACAAAATAACCACTTTGAAAAATAAAATTAAAAATTCCAAAAGCAAAATCACTAAAACCCAAATTCGTTTCACGACATCAGATTCTCAGCATAATCCAACACCGAATCGCAGTTATCTCTCAGCATAATCGGGGATCGATGGGGGCGCTGATGTCAAAGATGTGGTTC...

CDS

2 records

下载 CDS FASTA

LOC131001112
ATGGGGGCGCTGATGTCAAAGATGTGGTTCATGCTGTTTCCGGCGAAGGAGTACAAGATCGTGGTGGTGGGGCTCGACAACGCCGGAAAAACGACGACGCTTTACAAGCTCCATTTGGGGGAGGTGGTCACTACGCATCCAACTGTCGGCAGCAATGTTGAAGAGGTTGTCTACAAGAATATTCGATTTGAGGTGTGGGATCTTGGCGGTCAGGATAGGTTGAGGACATCGTGGACAACATATTATCGCGGGACTCATGC...

Protein

2 records

下载 Protein FASTA

XP_057783322.1
MGALMSKMWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEEVVYKNIRFEVWDLGGQDRLRTSWTTYYRGTHAVIVVIDSTDRARISIMKDELFGLLPNEDLQSAVVLVFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACCALTGEGLYDGLGWIAQRVAGKATT

XP_057783323.1
MGALMSKMWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEEVVYKNIRFEVWDLGGQDRLRTSWTTYYRGTHAVIVVIDSTDRARISIMKDELFGLLPNEDLQSAVVLVFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACCALTGEGLYDGLGWIAQRVAGKATT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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