Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G001573

染色体: Chr08 坐标: 12939860-12941929 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G001573
名称SmilChr08G001573
描述uncharacterized SmilChr08G001573
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向12939860 - 12941929 / -

ID 对照

NCBI Gene IDLOC131001114
GeneID131001114
locus_tag-
NCBI NameLOC131001114
原始查询SmilChr08G001573

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述confidence=no_hit
产物confidence=no_hit
Arabidopsis-
-
Rice-
-
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131001114

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057783326.1
2 Cytosol 细胞质基质 0.20000 XP_057783340.1
3 Nucleus 细胞核 0.00000 XP_057783326.1
4 Chromosome 染色体 0.00000 XP_057783326.1
5 Centromere 着丝粒 0.00000 XP_057783326.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:12940130 G A EMS_canonical_SNV CDS_variant 2 B2,B24
Chr8:12940239 G A EMS_canonical_SNV CDS_variant 3 B134,B6,D3
Chr8:12940257 G A EMS_canonical_SNV CDS_variant 3 A23,B84,C20
Chr8:12940269 G A EMS_canonical_SNV CDS_variant 3 A23,B84,C20
Chr8:12940288 G A EMS_canonical_SNV stop_gained 6 A20,B46,B82,C20,C48,C58
Chr8:12940375 G A EMS_canonical_SNV stop_gained 1 B33
Chr8:12940375 G A EMS_canonical_SNV CDS_variant 1 B33
Chr8:12940552 C T EMS_canonical_SNV CDS_variant 3 A23,B84,C20
Chr8:12941263 C T EMS_canonical_SNV CDS_variant 3 C30,C46,C9
Chr8:12941266 G A EMS_canonical_SNV CDS_variant 1 B97
Chr8:12941308 C T EMS_canonical_SNV CDS_variant 1 B4
Chr8:12941429 G A EMS_canonical_SNV CDS_variant 4 B1,B41,B99,C87

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

15 records

下载 cDNA FASTA
XM_057927357.1
ACAACAATGTTTAAGGAAAAGAAGTCTGCATTAATGAGCCTTTTTTGTACTTCAAAAATAAGAGTTAAAAGTGGGAGAAAACAAGTCTAAAGTCTTTTGCTTTAAGCAAACATAAGCAAAAACACTCTGGCAATGCCAGTTTCTGCTGCATTAAAGGATACAACAGTGGAACAAATATAAGAGATGGGAAATCAAAACGCTTCAGGGATAGTAGAAGAGGAGGAAGCCAAGAACGAGGCACCAGATAACGCGCAAGGAAT...
XM_057927351.1
AACAATGTTTAAGGAAAAGAAGTCTGCATTAATGAGCCTTTTTTGTACTTCAAAAATAAGAGTTAAAAGTGGGAGAAAACAAGTCTAAAGTCTTTTGCTTTAAGCAAACATAAGCAAAAACACTCTGGCAATGCCAGTTTCTGCTGCATTAAAGGATACAACAGTGGAACAAATATAAGAGATGGGAAATCAAAACGCTTCAGGGATAGTAGAGGAGGAAGCCAAGAACGAGGCACCAGATAACGCGCAAGGAATTAGTC...

CDS

15 records

下载 CDS FASTA
LOC131001114
ATGGGAAATCAAAACGCTTCAGGGATAGTAGAGGAGGAAGCCAAGAACGAGGCACCAGATAACGCGCAAGGAATTAGTCCACCAGATGCTGTCGCAGTAGAGAAGCAGACAGTGGTTCAAGAAAATGCAGCAGAAGCTGACAAAATTCCTCCTGTTGAAATACATAAGGATGTTGAGGATCGCAAGGAATCTGATGCTGTGATGGATATCAGCACGAACGGCTCGGATTTAGGGGAAGGAAGATCCGAGTTGAGTGATGA...
LOC131001114
ATGGGAAATCAAAACGCTTCAGGGATAGTAGAGGAGGAAGCCAAGAACGAGGCACCAGATAACGCGCAAGGAATTAGTCCACCAGATGCTGTCGCAGTAGAGAAGCAGACAGTGGTTCAAGAAAATGCAGCAGAAGCTGACAAAATTCCTCCTGTTGAAATACATAAGGATGTTGAGGATCGCAAGGAATCTGATGCTGTGATGGATATCAGCACGAACGGCTCGGATTTAGGGGAAGGAAGATCCGAGTTGAGTGATGA...

Protein

15 records

下载 Protein FASTA
XP_057783326.1
MGNQNASGIVEEEEAKNEAPDNAQGISPPDAVAVEKQTVVQENAAEADKIPPVEIHKADVEDRKESDAVMDISTNGSDLGEGRSELSDEEPCTLTAVNTTSDIQEEQTVLVKEVLEVDDDANKNEQYLALASPQDTVLQVREEALGRDDDYEPPQEEQSNSFTTANEAPRTSLVGSSTSQNECLTLDHEEKPMIHELGNGDEQSDQENNQFLIRCSSNPMEVIKAEFEENVDDAEKQQDNELTDQDVVEKAIDLESDASD...
XP_057783328.1
MGNQNASGIVEEEEAKNEAPDNAQGISPPDAVAVEKQTVVQENAAEADKIPPVEIHKADVEDRKESDAVMDISTNGSDLGEGRSELSDEEPCTLTAVNTTSDIQEEQTVLVKEVLEVDDDANKNEQYLALASPQDTVLQVREEALGRDDDYEPPQEEQSNSFTTANEAPRTSLVGSSTSQNECLTLDHEEKPMIHELGNGDEQSDQENNQFLIRCSSNPMEVIKAEFEENVDDAEKQQDNELTDQDVVEKAIDLESDASD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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