当前解析结果
SmilChr08G001587| 统一新 Gene ID | SmilChr08G001587 |
|---|---|
| 名称 | SmilChr08G001587 |
| 描述 | protein NETWORKED 1A-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 13110992 - 13118439 / - |
| NCBI Gene ID | LOC131001132 |
|---|---|
| GeneID | 131001132 |
| locus_tag | - |
| NCBI Name | LOC131001132 |
| 原始查询 | SmilChr08G001587 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein NETWORKED 1A-like |
| 产物 | protein NETWORKED 1A-like |
| Arabidopsis | AT3G22790 (NET1A)Kinase interacting (KIP1-like) family protein [Source:NCBI gene (formerly Entrezgene);Acc:821850] identity=41.3; qcov=1.02; evalue=0; confidence=medium |
| Rice | Os03g0161100- identity=25.5; qcov=0.879; evalue=1.12e-82; confidence=low |
| GO | GO:0005886 (plasma membrane); GO:0051015 (actin filament binding) |
| KEGG | - |
| Pfam | PF07765 (KIP1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001132 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057783365.1 |
| 2 | Phragmoplast | Phragmoplast | 0.40000 | XP_057783365.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057783365.1 |
| 4 | Spindle | Spindle | 0.20000 | XP_057783365.1 |
| 5 | Spindle pole | Spindle pole | 0.20000 | XP_057783365.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:13111457 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr8:13111516 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr8:13111688 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr8:13111718 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr8:13112506 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B103,B22,B61 |
Chr8:13112649 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr8:13112700 |
ATC |
A |
2bp_deletion | frameshift_variant | 1 | C31 |
Chr8:13112700 |
ATC |
A |
2bp_deletion | CDS_variant | 1 | C31 |
Chr8:13112703 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | C31 |
Chr8:13112703 |
G |
GA |
1bp_insertion | CDS_variant | 1 | C31 |
Chr8:13112858 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | C15,C30 |
Chr8:13112858 |
AG |
A |
1bp_deletion | CDS_variant | 2 | C15,C30 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057783365.1PF07765
KIP1 14-87 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783365.1 |
Pfam | PF07765 |
KIP1 | Family | 14 | 87 | 8.4e-37 | 125.9 | KIP1-like protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。