当前解析结果
SmilChr08G001616| 统一新 Gene ID | SmilChr08G001616 |
|---|---|
| 名称 | SmilChr08G001616 |
| 描述 | folate-biopterin transporter 1, chloroplastic-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 13387134 - 13391206 / + |
| NCBI Gene ID | LOC131001159 |
|---|---|
| GeneID | 131001159 |
| locus_tag | - |
| NCBI Name | LOC131001159 |
| 原始查询 | SmilChr08G001616 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | folate-biopterin transporter 1, chloroplastic-like |
| 产物 | folate-biopterin transporter 1%2C chloroplastic-like |
| Arabidopsis | AT2G32040 (AT2G32040)Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817764] identity=80; qcov=1; evalue=0; confidence=high |
| Rice | Os07g0172900 (P0496D04.34-1)- identity=78.2; qcov=0.998; evalue=0; confidence=high |
| GO | GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF03092 (BT1); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001159 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057783418.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057783418.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.80000 | XP_057783419.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057783418.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057783418.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:13387295 |
C |
CT |
1bp_insertion | frameshift_variant | 6 | A2,B101,B126,B54,B7,C58 |
Chr8:13387310 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A22,B32 |
Chr8:13387315 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B134,C11,C69 |
Chr8:13387333 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C77 |
Chr8:13387335 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:13387339 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B131,B41,B99,C87 |
Chr8:13387381 |
G |
GAC |
2bp_insertion | frameshift_variant | 2 | B138,B77 |
Chr8:13387381 |
G |
GAC |
2bp_insertion | CDS_variant | 2 | B138,B77 |
Chr8:13388253 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B105,B134,C11,C69,C85 |
Chr8:13388297 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B134,C11,C69 |
Chr8:13389108 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B20,C44,C66 |
Chr8:13389164 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057783418.1PF03092
BT1 125-538 aa
PF07690
MFS_1 134-484 aa
XP_057783419.1PF03092
BT1 6-419 aa
PF07690
MFS_1 17-365 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783418.1 |
Pfam | PF03092 |
BT1 | Family | 125 | 538 | 2.8e-146 | 488.4 | BT1 family |
XP_057783418.1 |
Pfam | PF07690 |
MFS_1 | Family | 134 | 484 | 6.2e-16 | 59.0 | Major Facilitator Superfamily |
XP_057783419.1 |
Pfam | PF03092 |
BT1 | Family | 6 | 419 | 1.2e-146 | 489.6 | BT1 family |
XP_057783419.1 |
Pfam | PF07690 |
MFS_1 | Family | 17 | 365 | 1.5e-16 | 61.0 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。