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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G001618

染色体: Chr08 坐标: 13414487-13418661 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G001618
名称SmilChr08G001618
描述pentatricopeptide repeat-containing protein At4g14820
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向13414487 - 13418661 / -

ID 对照

NCBI Gene IDLOC131001162
GeneID131001162
locus_tag-
NCBI NameLOC131001162
原始查询SmilChr08G001618

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At4g14820
产物pentatricopeptide repeat-containing protein At4g14820
ArabidopsisAT4G14820 (AT4G14820)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827139]
identity=52.4; qcov=0.999; evalue=0; confidence=high
RiceOs01g0176300
-
identity=41.1; qcov=0.876; evalue=5.3e-167; confidence=medium
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF17177 (PPR_long); PF20431 (E_motif); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131001162

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057783424.1
2 Chloroplast 叶绿体 0.20000 XP_057783424.1
3 Nucleus 细胞核 0.00000 XP_057783424.1
4 Chromosome 染色体 0.00000 XP_057783424.1
5 Centromere 着丝粒 0.00000 XP_057783424.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:13416114 C T EMS_canonical_SNV CDS_variant 1 C16
Chr8:13416902 C T EMS_canonical_SNV CDS_variant 1 C34
Chr8:13416974 G A EMS_canonical_SNV CDS_variant 5 B1,B41,B52,B99,C87
Chr8:13417100 G A EMS_canonical_SNV CDS_variant 1 D11
Chr8:13417130 G A EMS_canonical_SNV CDS_variant 1 B2
Chr8:13418071 G A EMS_canonical_SNV CDS_variant 2 B123,B24
Chr8:13418163 C T EMS_canonical_SNV CDS_variant 5 B12,B29,B3,B78,B91
Chr8:13418260 C T EMS_canonical_SNV CDS_variant 1 B2
Chr8:13418278 G A EMS_canonical_SNV CDS_variant 5 B26,B68,C20,C41,D11
Chr8:13418554 G A EMS_canonical_SNV CDS_variant 1 D4
Chr8:13418587 C T EMS_canonical_SNV CDS_variant 1 B6
Chr8:13418627 GC G 1bp_deletion frameshift_variant 1 B18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783424.1
725 aa
N
1
362
725
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR
TPR_24
PPR_3
PPR_2
PPR
PPR_3
PPR
PPR_2
PPR_3
PPR
PPR_long
PPR
PPR
E_motif
DYW_deaminase
C
PF01535 PPR 159-185 aa PF12854 PPR_1 184-213 aa PF13041 PPR_2 184-232 aa PF01535 PPR 187-215 aa PF13812 PPR_3 208-249 aa PF01535 PPR 291-317 aa PF23276 TPR_24 304-413 aa PF13812 PPR_3 317-363 aa PF13041 PPR_2 317-365 aa PF01535 PPR 319-349 aa PF13812 PPR_3 339-383 aa PF01535 PPR 392-419 aa PF13041 PPR_2 417-465 aa PF13812 PPR_3 418-464 aa PF01535 PPR 420-449 aa PF17177 PPR_long 432-516 aa PF01535 PPR 456-483 aa PF01535 PPR 492-516 aa PF20431 E_motif 535-597 aa PF14432 DYW_deaminase 633-725 aa
XP_057783425.1
725 aa
N
1
362
725
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR
TPR_24
PPR_3
PPR_2
PPR
PPR_3
PPR
PPR_2
PPR_3
PPR
PPR_long
PPR
PPR
E_motif
DYW_deaminase
C
PF01535 PPR 159-185 aa PF12854 PPR_1 184-213 aa PF13041 PPR_2 184-232 aa PF01535 PPR 187-215 aa PF13812 PPR_3 208-249 aa PF01535 PPR 291-317 aa PF23276 TPR_24 304-413 aa PF13812 PPR_3 317-363 aa PF13041 PPR_2 317-365 aa PF01535 PPR 319-349 aa PF13812 PPR_3 339-383 aa PF01535 PPR 392-419 aa PF13041 PPR_2 417-465 aa PF13812 PPR_3 418-464 aa PF01535 PPR 420-449 aa PF17177 PPR_long 432-516 aa PF01535 PPR 456-483 aa PF01535 PPR 492-516 aa PF20431 E_motif 535-597 aa PF14432 DYW_deaminase 633-725 aa
XP_057783426.1
725 aa
N
1
362
725
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR
TPR_24
PPR_3
PPR_2
PPR
PPR_3
PPR
PPR_2
PPR_3
PPR
PPR_long
PPR
PPR
E_motif
DYW_deaminase
C
PF01535 PPR 159-185 aa PF12854 PPR_1 184-213 aa PF13041 PPR_2 184-232 aa PF01535 PPR 187-215 aa PF13812 PPR_3 208-249 aa PF01535 PPR 291-317 aa PF23276 TPR_24 304-413 aa PF13812 PPR_3 317-363 aa PF13041 PPR_2 317-365 aa PF01535 PPR 319-349 aa PF13812 PPR_3 339-383 aa PF01535 PPR 392-419 aa PF13041 PPR_2 417-465 aa PF13812 PPR_3 418-464 aa PF01535 PPR 420-449 aa PF17177 PPR_long 432-516 aa PF01535 PPR 456-483 aa PF01535 PPR 492-516 aa PF20431 E_motif 535-597 aa PF14432 DYW_deaminase 633-725 aa
XP_057783427.1
725 aa
N
1
362
725
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR
TPR_24
PPR_3
PPR_2
PPR
PPR_3
PPR
PPR_2
PPR_3
PPR
PPR_long
PPR
PPR
E_motif
DYW_deaminase
C
PF01535 PPR 159-185 aa PF12854 PPR_1 184-213 aa PF13041 PPR_2 184-232 aa PF01535 PPR 187-215 aa PF13812 PPR_3 208-249 aa PF01535 PPR 291-317 aa PF23276 TPR_24 304-413 aa PF13812 PPR_3 317-363 aa PF13041 PPR_2 317-365 aa PF01535 PPR 319-349 aa PF13812 PPR_3 339-383 aa PF01535 PPR 392-419 aa PF13041 PPR_2 417-465 aa PF13812 PPR_3 418-464 aa PF01535 PPR 420-449 aa PF17177 PPR_long 432-516 aa PF01535 PPR 456-483 aa PF01535 PPR 492-516 aa PF20431 E_motif 535-597 aa PF14432 DYW_deaminase 633-725 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057783424.1 Pfam PF01535 PPR Repeat 159 185 1.4e-62 204.3 PPR repeat
XP_057783424.1 Pfam PF12854 PPR_1 Repeat 184 213 8.6e-40 134.9 PPR repeat
XP_057783424.1 Pfam PF13041 PPR_2 Repeat 184 232 6.2e-64 212.6 PPR repeat family
XP_057783424.1 Pfam PF01535 PPR Repeat 187 215 1.4e-62 204.3 PPR repeat
XP_057783424.1 Pfam PF13812 PPR_3 Repeat 208 249 1.1e-28 99.8 Pentatricopeptide repeat domain
XP_057783424.1 Pfam PF01535 PPR Repeat 291 317 1.4e-62 204.3 PPR repeat
XP_057783424.1 Pfam PF23276 TPR_24 Repeat 304 413 2.8e-21 76.5 Pentatricopeptide repeat-containing protein
XP_057783424.1 Pfam PF13812 PPR_3 Repeat 317 363 1.1e-28 99.8 Pentatricopeptide repeat domain
XP_057783424.1 Pfam PF13041 PPR_2 Repeat 317 365 6.2e-64 212.6 PPR repeat family
XP_057783424.1 Pfam PF01535 PPR Repeat 319 349 1.4e-62 204.3 PPR repeat
XP_057783424.1 Pfam PF13812 PPR_3 Repeat 339 383 1.1e-28 99.8 Pentatricopeptide repeat domain
XP_057783424.1 Pfam PF01535 PPR Repeat 392 419 1.4e-62 204.3 PPR repeat
XP_057783424.1 Pfam PF13041 PPR_2 Repeat 417 465 6.2e-64 212.6 PPR repeat family
XP_057783424.1 Pfam PF13812 PPR_3 Repeat 418 464 1.1e-28 99.8 Pentatricopeptide repeat domain
XP_057783424.1 Pfam PF01535 PPR Repeat 420 449 1.4e-62 204.3 PPR repeat
XP_057783424.1 Pfam PF17177 PPR_long Repeat 432 516 1.5e-18 67.7 Pentacotripeptide-repeat region of PRORP
XP_057783424.1 Pfam PF01535 PPR Repeat 456 483 1.4e-62 204.3 PPR repeat
XP_057783424.1 Pfam PF01535 PPR Repeat 492 516 1.4e-62 204.3 PPR repeat
XP_057783424.1 Pfam PF20431 E_motif Repeat 535 597 1e-20 74.4 E motif
XP_057783424.1 Pfam PF14432 DYW_deaminase Domain 633 725 2.2e-38 130.7 DYW family of nucleic acid deaminases
XP_057783425.1 Pfam PF01535 PPR Repeat 159 185 1.4e-62 204.3 PPR repeat
XP_057783425.1 Pfam PF12854 PPR_1 Repeat 184 213 8.6e-40 134.9 PPR repeat
XP_057783425.1 Pfam PF13041 PPR_2 Repeat 184 232 6.2e-64 212.6 PPR repeat family
XP_057783425.1 Pfam PF01535 PPR Repeat 187 215 1.4e-62 204.3 PPR repeat
XP_057783425.1 Pfam PF13812 PPR_3 Repeat 208 249 1.1e-28 99.8 Pentatricopeptide repeat domain
XP_057783425.1 Pfam PF01535 PPR Repeat 291 317 1.4e-62 204.3 PPR repeat
XP_057783425.1 Pfam PF23276 TPR_24 Repeat 304 413 2.8e-21 76.5 Pentatricopeptide repeat-containing protein
XP_057783425.1 Pfam PF13812 PPR_3 Repeat 317 363 1.1e-28 99.8 Pentatricopeptide repeat domain
XP_057783425.1 Pfam PF13041 PPR_2 Repeat 317 365 6.2e-64 212.6 PPR repeat family
XP_057783425.1 Pfam PF01535 PPR Repeat 319 349 1.4e-62 204.3 PPR repeat
XP_057783425.1 Pfam PF13812 PPR_3 Repeat 339 383 1.1e-28 99.8 Pentatricopeptide repeat domain
XP_057783425.1 Pfam PF01535 PPR Repeat 392 419 1.4e-62 204.3 PPR repeat
XP_057783425.1 Pfam PF13041 PPR_2 Repeat 417 465 6.2e-64 212.6 PPR repeat family
XP_057783425.1 Pfam PF13812 PPR_3 Repeat 418 464 1.1e-28 99.8 Pentatricopeptide repeat domain
XP_057783425.1 Pfam PF01535 PPR Repeat 420 449 1.4e-62 204.3 PPR repeat
XP_057783425.1 Pfam PF17177 PPR_long Repeat 432 516 1.5e-18 67.7 Pentacotripeptide-repeat region of PRORP
XP_057783425.1 Pfam PF01535 PPR Repeat 456 483 1.4e-62 204.3 PPR repeat
XP_057783425.1 Pfam PF01535 PPR Repeat 492 516 1.4e-62 204.3 PPR repeat
XP_057783425.1 Pfam PF20431 E_motif Repeat 535 597 1e-20 74.4 E motif
XP_057783425.1 Pfam PF14432 DYW_deaminase Domain 633 725 2.2e-38 130.7 DYW family of nucleic acid deaminases
XP_057783426.1 Pfam PF01535 PPR Repeat 159 185 1.4e-62 204.3 PPR repeat
XP_057783426.1 Pfam PF12854 PPR_1 Repeat 184 213 8.6e-40 134.9 PPR repeat
XP_057783426.1 Pfam PF13041 PPR_2 Repeat 184 232 6.2e-64 212.6 PPR repeat family
XP_057783426.1 Pfam PF01535 PPR Repeat 187 215 1.4e-62 204.3 PPR repeat
XP_057783426.1 Pfam PF13812 PPR_3 Repeat 208 249 1.1e-28 99.8 Pentatricopeptide repeat domain
XP_057783426.1 Pfam PF01535 PPR Repeat 291 317 1.4e-62 204.3 PPR repeat
XP_057783426.1 Pfam PF23276 TPR_24 Repeat 304 413 2.8e-21 76.5 Pentatricopeptide repeat-containing protein
XP_057783426.1 Pfam PF13812 PPR_3 Repeat 317 363 1.1e-28 99.8 Pentatricopeptide repeat domain
XP_057783426.1 Pfam PF13041 PPR_2 Repeat 317 365 6.2e-64 212.6 PPR repeat family
XP_057783426.1 Pfam PF01535 PPR Repeat 319 349 1.4e-62 204.3 PPR repeat
XP_057783426.1 Pfam PF13812 PPR_3 Repeat 339 383 1.1e-28 99.8 Pentatricopeptide repeat domain
XP_057783426.1 Pfam PF01535 PPR Repeat 392 419 1.4e-62 204.3 PPR repeat
XP_057783426.1 Pfam PF13041 PPR_2 Repeat 417 465 6.2e-64 212.6 PPR repeat family
XP_057783426.1 Pfam PF13812 PPR_3 Repeat 418 464 1.1e-28 99.8 Pentatricopeptide repeat domain
XP_057783426.1 Pfam PF01535 PPR Repeat 420 449 1.4e-62 204.3 PPR repeat
XP_057783426.1 Pfam PF17177 PPR_long Repeat 432 516 1.5e-18 67.7 Pentacotripeptide-repeat region of PRORP
XP_057783426.1 Pfam PF01535 PPR Repeat 456 483 1.4e-62 204.3 PPR repeat
XP_057783426.1 Pfam PF01535 PPR Repeat 492 516 1.4e-62 204.3 PPR repeat
XP_057783426.1 Pfam PF20431 E_motif Repeat 535 597 1e-20 74.4 E motif
XP_057783426.1 Pfam PF14432 DYW_deaminase Domain 633 725 2.2e-38 130.7 DYW family of nucleic acid deaminases
XP_057783427.1 Pfam PF01535 PPR Repeat 159 185 1.4e-62 204.3 PPR repeat
XP_057783427.1 Pfam PF12854 PPR_1 Repeat 184 213 8.6e-40 134.9 PPR repeat
XP_057783427.1 Pfam PF13041 PPR_2 Repeat 184 232 6.2e-64 212.6 PPR repeat family
XP_057783427.1 Pfam PF01535 PPR Repeat 187 215 1.4e-62 204.3 PPR repeat
XP_057783427.1 Pfam PF13812 PPR_3 Repeat 208 249 1.1e-28 99.8 Pentatricopeptide repeat domain
XP_057783427.1 Pfam PF01535 PPR Repeat 291 317 1.4e-62 204.3 PPR repeat
XP_057783427.1 Pfam PF23276 TPR_24 Repeat 304 413 2.8e-21 76.5 Pentatricopeptide repeat-containing protein
XP_057783427.1 Pfam PF13812 PPR_3 Repeat 317 363 1.1e-28 99.8 Pentatricopeptide repeat domain
XP_057783427.1 Pfam PF13041 PPR_2 Repeat 317 365 6.2e-64 212.6 PPR repeat family
XP_057783427.1 Pfam PF01535 PPR Repeat 319 349 1.4e-62 204.3 PPR repeat
XP_057783427.1 Pfam PF13812 PPR_3 Repeat 339 383 1.1e-28 99.8 Pentatricopeptide repeat domain
XP_057783427.1 Pfam PF01535 PPR Repeat 392 419 1.4e-62 204.3 PPR repeat
XP_057783427.1 Pfam PF13041 PPR_2 Repeat 417 465 6.2e-64 212.6 PPR repeat family
XP_057783427.1 Pfam PF13812 PPR_3 Repeat 418 464 1.1e-28 99.8 Pentatricopeptide repeat domain
XP_057783427.1 Pfam PF01535 PPR Repeat 420 449 1.4e-62 204.3 PPR repeat
XP_057783427.1 Pfam PF17177 PPR_long Repeat 432 516 1.5e-18 67.7 Pentacotripeptide-repeat region of PRORP
XP_057783427.1 Pfam PF01535 PPR Repeat 456 483 1.4e-62 204.3 PPR repeat
XP_057783427.1 Pfam PF01535 PPR Repeat 492 516 1.4e-62 204.3 PPR repeat
XP_057783427.1 Pfam PF20431 E_motif Repeat 535 597 1e-20 74.4 E motif
XP_057783427.1 Pfam PF14432 DYW_deaminase Domain 633 725 2.2e-38 130.7 DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057927443.1
CGAAGTCGGACACTCATTTCATCAACACTCATGGCTCACCCTCTCCCCTCCGCCGCACTCCCTCCTGTGCCCGCGCCCCTCTGCCACCCGCCCAACTTCGCCCACCTCATCTCCACCGCCACCGCCCTCCCCCACCTCAAGCAAATCCAAGCTCAGATCCTCCGCAACTCCCACCACCACCACCACAACCACCACCTCTTCCAACTCCTCCTCTATTCCCTCCCCTTTCCTACCTACGCCCTCTCCTTACTCTCCTTCAT...
XM_057927441.1
CGAAGTCGGACACTCATTTCATCAACACTCATGGCTCACCCTCTCCCCTCCGCCGCACTCCCTCCTGTGCCCGCGCCCCTCTGCCACCCGCCCAACTTCGCCCACCTCATCTCCACCGCCACCGCCCTCCCCCACCTCAAGCAAATCCAAGCTCAGATCCTCCGCAACTCCCACCACCACCACCACAACCACCACCTCTTCCAACTCCTCCTCTATTCCCTCCCCTTTCCTACCTACGCCCTCTCCTTACTCTCCTTCAT...

CDS

4 records

下载 CDS FASTA
LOC131001162
ATGGCTCACCCTCTCCCCTCCGCCGCACTCCCTCCTGTGCCCGCGCCCCTCTGCCACCCGCCCAACTTCGCCCACCTCATCTCCACCGCCACCGCCCTCCCCCACCTCAAGCAAATCCAAGCTCAGATCCTCCGCAACTCCCACCACCACCACCACAACCACCACCTCTTCCAACTCCTCCTCTATTCCCTCCCCTTTCCTACCTACGCCCTCTCCTTACTCTCCTTCATCCCTACCGACAGCCCCCCGCCGCCGCAGCT...
LOC131001162
ATGGCTCACCCTCTCCCCTCCGCCGCACTCCCTCCTGTGCCCGCGCCCCTCTGCCACCCGCCCAACTTCGCCCACCTCATCTCCACCGCCACCGCCCTCCCCCACCTCAAGCAAATCCAAGCTCAGATCCTCCGCAACTCCCACCACCACCACCACAACCACCACCTCTTCCAACTCCTCCTCTATTCCCTCCCCTTTCCTACCTACGCCCTCTCCTTACTCTCCTTCATCCCTACCGACAGCCCCCCGCCGCCGCAGCT...

Protein

4 records

下载 Protein FASTA
XP_057783424.1
MAHPLPSAALPPVPAPLCHPPNFAHLISTATALPHLKQIQAQILRNSHHHHHNHHLFQLLLYSLPFPTYALSLLSFIPTDSPPPPQLPNKILKHLSRSDGPHKALVFFQAMQNKFFPIDRYSFPPLLKAASRALSLSEGKMIHGLAAKLGYESDPFVQTALLGMYAACGLISEARLVFDKMPQRDVVTWNIMIDGYCQSRLFDNVLALLEEMKSSEVQPDARVFTTILAACSRVGNLDFGRLVQGYISESNVVFDYHLQT...
XP_057783425.1
MAHPLPSAALPPVPAPLCHPPNFAHLISTATALPHLKQIQAQILRNSHHHHHNHHLFQLLLYSLPFPTYALSLLSFIPTDSPPPPQLPNKILKHLSRSDGPHKALVFFQAMQNKFFPIDRYSFPPLLKAASRALSLSEGKMIHGLAAKLGYESDPFVQTALLGMYAACGLISEARLVFDKMPQRDVVTWNIMIDGYCQSRLFDNVLALLEEMKSSEVQPDARVFTTILAACSRVGNLDFGRLVQGYISESNVVFDYHLQT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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