当前解析结果
SmilChr08G001629| 统一新 Gene ID | SmilChr08G001629 |
|---|---|
| 名称 | SmilChr08G001629 |
| 描述 | serine/threonine-protein kinase BLUS1 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 13477912 - 13479664 / + |
| NCBI Gene ID | LOC131001173 |
|---|---|
| GeneID | 131001173 |
| locus_tag | - |
| NCBI Name | LOC131001173 |
| 原始查询 | SmilChr08G001629 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase BLUS1 |
| 产物 | serine/threonine-protein kinase BLUS1 |
| Arabidopsis | AT4G14480 (AT4G14480)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827095] identity=56.2; qcov=1.05; evalue=3.9e-180; confidence=high |
| Rice | Os06g0486400- identity=48.9; qcov=0.803; evalue=2.87e-113; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0043539 (protein serine/threonine kinase activator activity) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001173 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057783470.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057783470.1 |
| 3 | Cytosol | 细胞质基质 | 1.00000 | XP_057783470.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057783470.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057783470.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:13478194 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr8:13478362 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr8:13478506 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B6,B99 |
Chr8:13478521 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B138,B54 |
Chr8:13478556 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr8:13478706 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,B80 |
Chr8:13478954 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr8:13479081 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr8:13479128 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr8:13479135 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr8:13479164 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B51 |
Chr8:13479199 |
A |
AGC |
2bp_insertion | frameshift_variant | 4 | B133,C22,C80,D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057783470.1PF00069
Pkinase 14-292 aa
PF07714
PK_Tyr_Ser-Thr 16-288 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783470.1 |
Pfam | PF00069 |
Pkinase | Domain | 14 | 292 | 1e-62 | 212.7 | Protein kinase domain |
XP_057783470.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 16 | 288 | 5e-43 | 148.0 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。