当前解析结果
SmilChr08G001652| 统一新 Gene ID | SmilChr08G001652 |
|---|---|
| 名称 | SmilChr08G001652 |
| 描述 | uncharacterized SmilChr08G001652 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 13717667 - 13718495 / - |
| NCBI Gene ID | LOC130998099 |
|---|---|
| GeneID | 130998099 |
| locus_tag | - |
| NCBI Name | LOC130998099 |
| 原始查询 | SmilChr08G001652 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | SOUL heme-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:838280]; symbol=HBP1; hit=AT1G17100; species=arabidopsis; confidence=low |
| 产物 | SOUL heme-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:838280]; symbol=HBP1; hit=AT1G17100; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G17100 (HBP1)SOUL heme-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:838280] identity=27.6; qcov=0.743; evalue=9.47e-15; confidence=low |
| Rice | Os01g0210500- identity=26.6; qcov=0.733; evalue=1.57e-10; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF04832 (SOUL) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998099 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057779516.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057779516.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057779516.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779516.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779516.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:13717691 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,B106,B58,C70,C77 |
Chr8:13717710 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A15,B106,B126,C70,C77 |
Chr8:13717711 |
C |
CTT |
2bp_insertion | frameshift_variant | 7 | A15,B106,B126,B2,C66,C70,C77 |
Chr8:13717717 |
T |
TC |
1bp_insertion | frameshift_variant | 5 | A15,B106,B126,C70,C77 |
Chr8:13717717 |
T |
TC |
1bp_insertion | CDS_variant | 5 | A15,B106,B126,C70,C77 |
Chr8:13717848 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr8:13717930 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C18,C46 |
Chr8:13717939 |
A |
AAT |
2bp_insertion | frameshift_variant | 45 | A18,A24,A4,A5,A7,A9,B104,B117,B118,B119,B12,B120,B125,B2,B23,B25,B54,B56,B62,B65,B7,B70,B71,B75,B79,B80,B84,B89,B94,B96,C1,C18,C22,C25,C29,C38,C39,C41,C44,C46,C49,C54,C55,C7,C77 |
Chr8:13717945 |
AGT |
A |
2bp_deletion | frameshift_variant | 44 | A18,A24,A4,A5,A7,A9,B104,B118,B119,B12,B120,B125,B2,B23,B25,B54,B56,B62,B65,B7,B70,B71,B75,B79,B80,B84,B89,B94,B96,C1,C18,C22,C25,C29,C38,C39,C41,C44,C46,C49,C54,C55,C7,C77 |
Chr8:13717992 |
TA |
T |
1bp_deletion | frameshift_variant | 3 | B4,B89,C18 |
Chr8:13717992 |
TA |
T |
1bp_deletion | CDS_variant | 3 | B4,B89,C18 |
Chr8:13718013 |
TG |
T |
1bp_deletion | frameshift_variant | 57 | A10,A13,A18,A24,A4,A7,A9,B104,B105,B107,B112,B119,B12,B120,B125,B126,B134,B135,B18,B2,B23,B32,B4,B62,B65,B71,B75,B77,B79,B80,B84,B89,B92,B94,B96,C1,C15,C18,C20,C29,C35,C38,C39,C41,C43,C44,C49,C5,C51,C54,C55,C61,C7,C76,C83,D11,D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779516.1PF04832
SOUL 40-194 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779516.1 |
Pfam | PF04832 |
SOUL | Family | 40 | 194 | 7.9e-19 | 69.1 | SOUL heme-binding protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。