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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G001663

染色体: Chr08 坐标: 13857489-13864115 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G001663
名称SmilChr08G001663
描述uncharacterized SmilChr08G001663
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向13857489 - 13864115 / +

ID 对照

NCBI Gene IDLOC131001209
GeneID131001209
locus_tag-
NCBI NameLOC131001209
原始查询SmilChr08G001663

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827078]; symbol=AT4G14350; hit=AT4G14350; species=arabidopsis; confidence=high
产物AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827078]; symbol=AT4G14350; hit=AT4G14350; species=arabidopsis; confidence=high
ArabidopsisAT4G14350 (AT4G14350)
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827078]
identity=80.6; qcov=0.991; evalue=0; confidence=high
RiceOs05g0511400
-
identity=74; qcov=1; evalue=0; confidence=high
GOGO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction)
KEGG-
PfamPF00069 (Pkinase); PF00433 (Pkinase_C); PF03109 (ABC1); PF07714 (PK_Tyr_Ser-Thr)
InterPro-
eggNOG-
NRGeneID:131001209

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057783509.1
2 Cytoplasm 细胞质 1.00000 XP_057783509.1
3 Cytosol 细胞质基质 1.00000 XP_057783509.1
4 Nucleoplasm 核质 0.80000 XP_057783510.1
5 Cell projection 细胞突起 0.20000 XP_057783509.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:13858823 G A EMS_canonical_SNV CDS_variant 4 B23,B6,C19,C85
Chr8:13858851 G A EMS_canonical_SNV CDS_variant 2 B25,C30
Chr8:13860681 G A EMS_canonical_SNV CDS_variant 2 B112,C59
Chr8:13862370 C T EMS_canonical_SNV CDS_variant 1 C6
Chr8:13863635 C T EMS_canonical_SNV CDS_variant 1 D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783509.1
551 aa
N
1
276
551
Pkinase
PK_Tyr_Ser-Thr
ABC1
Pkinase
Pkinase_C
C
PF00069 Pkinase 122-278 aa PF07714 PK_Tyr_Ser-Thr 124-269 aa PF03109 ABC1 194-270 aa PF00069 Pkinase 316-419 aa PF00433 Pkinase_C 438-482 aa
XP_057783510.1
547 aa
N
1
274
547
Pkinase
PK_Tyr_Ser-Thr
ABC1
Pkinase
Pkinase_C
C
PF00069 Pkinase 122-278 aa PF07714 PK_Tyr_Ser-Thr 124-269 aa PF03109 ABC1 194-270 aa PF00069 Pkinase 316-419 aa PF00433 Pkinase_C 438-482 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057783509.1 Pfam PF00069 Pkinase Domain 122 278 9.2e-66 222.6 Protein kinase domain
XP_057783509.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 124 269 8.8e-30 104.6 Protein tyrosine and serine/threonine kinase
XP_057783509.1 Pfam PF03109 ABC1 Domain 194 270 5.6e-07 29.7 ABC1 atypical kinase-like domain
XP_057783509.1 Pfam PF00069 Pkinase Domain 316 419 9.2e-66 222.6 Protein kinase domain
XP_057783509.1 Pfam PF00433 Pkinase_C Family 438 482 5e-08 34.3 Protein kinase C terminal domain
XP_057783510.1 Pfam PF00069 Pkinase Domain 122 278 8.8e-66 222.7 Protein kinase domain
XP_057783510.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 124 269 8.5e-30 104.6 Protein tyrosine and serine/threonine kinase
XP_057783510.1 Pfam PF03109 ABC1 Domain 194 270 5.5e-07 29.7 ABC1 atypical kinase-like domain
XP_057783510.1 Pfam PF00069 Pkinase Domain 316 419 8.8e-66 222.7 Protein kinase domain
XP_057783510.1 Pfam PF00433 Pkinase_C Family 438 482 3.8e-08 34.7 Protein kinase C terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057927526.1
ACAGACTAACATGAAAAAGGCAAAAATATGACTCAATTTGACAAAGATTTCCATTTTCCCCAAAATACCCAATTTGTGAAGAAAGAAAAAAGTTTTATCACTGACTAAAAAACAAAGAACTCTCTCTCCATCTCTCTCTCTTCAACTTTTAATGGCGAATGATGCCACCAAAGCATAAAGCTCCATTACAGGCCTCTTCTTTAACTAACTTCTCTTTCTCAGAAAAGTCTAGGGTTTGAGAATTCACTGCTCTTTTATTG...
XM_057927527.1
ACAGACTAACATGAAAAAGGCAAAAATATGACTCAATTTGACAAAGATTTCCATTTTCCCCAAAATACCCAATTTGTGAAGAAAGAAAAAAGTTTTATCACTGACTAAAAAACAAAGAACTCTCTCTCCATCTCTCTCTCTTCAACTTTTAATGGCGAATGATGCCACCAAAGCATAAAGCTCCATTACAGGCCTCTTCTTTAACTAACTTCTCTTTCTCAGAAAAGTCTAGGGTTTGAGAATTCACTGCTCTTTTATTG...

CDS

2 records

下载 CDS FASTA
LOC131001209
ATGGAAGCTGCTAGGCGTTGGTGCGCGAAGTTCCATTCAAAGGAGAAGCATAAGACTTCAAACAAGAAGTCTGAGCCAAGGCCTAATGGAAAAGAAGGTTTGAAGGCACAATTGAATGAGGAAACGCCTTCAAATGCAACTAAACAGAAGGCAGCTGCAGCCAAGCAGTATATTGAAAAGCATTACAAGGAACAAATGAAGAGCTTGCAGGAAAGGAGGGAGCGACGTAATATGCTTGAGAAGAAACTAGCTGATGCTGA...
LOC131001209
ATGGAAGCTGCTAGGCGTTGGTGCGCGAAGTTCCATTCAAAGGAGAAGCATAAGACTTCAAACAAGAAGTCTGAGCCAAGGCCTAATGGAAAAGAAGGTTTGAAGGCACAATTGAATGAGGAAACGCCTTCAAATGCAACTAAACAGAAGGCAGCTGCAGCCAAGCAGTATATTGAAAAGCATTACAAGGAACAAATGAAGAGCTTGCAGGAAAGGAGGGAGCGACGTAATATGCTTGAGAAGAAACTAGCTGATGCTGA...

Protein

2 records

下载 Protein FASTA
XP_057783509.1
MEAARRWCAKFHSKEKHKTSNKKSEPRPNGKEGLKAQLNEETPSNATKQKAAAAKQYIEKHYKEQMKSLQERRERRNMLEKKLADADVSAEEQNNILKYLEKKETEYMRLQRHKMGADDFEPLTMIGKGAFGEVRICREKKTGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDVMTLLMRKDTLTEDEAKFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLS...
XP_057783510.1
MEAARRWCAKFHSKEKHKTSNKKSEPRPNGKEGLKAQLNEETPSNATKQKAAAAKQYIEKHYKEQMKSLQERRERRNMLEKKLADADVSAEEQNNILKYLEKKETEYMRLQRHKMGADDFEPLTMIGKGAFGEVRICREKKTGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDVMTLLMRKDTLTEDEAKFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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