Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001669`

染色体: Chr08 坐标: 13917451-13926217 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001669`
名称	SmilChr08G001669
描述	COP1-interacting protein 7
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	13917451 - 13926217 / `+`

ID 对照

NCBI Gene ID	`LOC131001213`
GeneID	`131001213`
locus_tag	`-`
NCBI Name	`LOC131001213`
原始查询	`SmilChr08G001669`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	COP1-interacting protein 7
产物	COP1-interacting protein 7
Arabidopsis	`AT5G43310` (AT5G43310) COP1-interacting protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:834349] identity=38.4; qcov=1.03; evalue=0; confidence=medium
Rice	`Os03g0861100` - identity=34.6; qcov=1.02; evalue=1.35e-115; confidence=low
GO	-
KEGG	-
Pfam	PF30468 (CIP7_M); PF30469 (CIP7_N)
InterPro	-
eggNOG	-
NR	GeneID:131001213

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057783516.1`
2	Cell membrane	细胞膜	0.80000	`XP_057783522.1`
3	Nucleus	细胞核	0.20000	`XP_057783516.1`
4	Cytosol	细胞质基质	0.20000	`XP_057783516.1`
5	Chromosome	染色体	0.00000	`XP_057783522.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:13920806`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr8:13920929`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr8:13920945`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr8:13921241`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B23,B24,C19
`Chr8:13921256`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B98,C43,C45
`Chr8:13921498`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B107
`Chr8:13921498`	`GA`	`G`	1bp_deletion	CDS_variant	1	B107
`Chr8:13921561`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B23,B81,B87,C18,C46
`Chr8:13921627`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B23,B24,C19
`Chr8:13921852`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B124
`Chr8:13922020`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:13922215`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783516.1

1302 aa

651

1302

CIP7_N

CIP7_M

PF30469 CIP7_N 9-64 aa PF30468 CIP7_M 88-252 aa

XP_057783517.1

1302 aa

651

1302

CIP7_N

CIP7_M

PF30469 CIP7_N 9-64 aa PF30468 CIP7_M 88-252 aa

XP_057783518.1

1302 aa

651

1302

CIP7_N

CIP7_M

PF30469 CIP7_N 9-64 aa PF30468 CIP7_M 88-252 aa

XP_057783519.1

1301 aa

650

1301

CIP7_N

CIP7_M

PF30469 CIP7_N 9-64 aa PF30468 CIP7_M 88-252 aa

XP_057783520.1

1301 aa

650

1301

CIP7_N

CIP7_M

PF30469 CIP7_N 9-64 aa PF30468 CIP7_M 88-252 aa

XP_057783521.1

1301 aa

650

1301

CIP7_N

CIP7_M

PF30469 CIP7_N 9-64 aa PF30468 CIP7_M 88-252 aa

XP_057783522.1

1113 aa

556

1113

CIP7_M

PF30468 CIP7_M 1-63 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783516.1`	Pfam	`PF30469`	CIP7_N	Domain	9	64	6.7e-24	84.6	CIP7 N-terminal domain
`XP_057783516.1`	Pfam	`PF30468`	CIP7_M	Domain	88	252	6.9e-77	257.8	CIP7 middle helical domain
`XP_057783517.1`	Pfam	`PF30469`	CIP7_N	Domain	9	64	6.7e-24	84.6	CIP7 N-terminal domain
`XP_057783517.1`	Pfam	`PF30468`	CIP7_M	Domain	88	252	6.9e-77	257.8	CIP7 middle helical domain
`XP_057783518.1`	Pfam	`PF30469`	CIP7_N	Domain	9	64	6.7e-24	84.6	CIP7 N-terminal domain
`XP_057783518.1`	Pfam	`PF30468`	CIP7_M	Domain	88	252	6.9e-77	257.8	CIP7 middle helical domain
`XP_057783519.1`	Pfam	`PF30469`	CIP7_N	Domain	9	64	6.6e-24	84.6	CIP7 N-terminal domain
`XP_057783519.1`	Pfam	`PF30468`	CIP7_M	Domain	88	252	6.9e-77	257.8	CIP7 middle helical domain
`XP_057783520.1`	Pfam	`PF30469`	CIP7_N	Domain	9	64	6.6e-24	84.6	CIP7 N-terminal domain
`XP_057783520.1`	Pfam	`PF30468`	CIP7_M	Domain	88	252	6.9e-77	257.8	CIP7 middle helical domain
`XP_057783521.1`	Pfam	`PF30469`	CIP7_N	Domain	9	64	6.6e-24	84.6	CIP7 N-terminal domain
`XP_057783521.1`	Pfam	`PF30468`	CIP7_M	Domain	88	252	6.9e-77	257.8	CIP7 middle helical domain
`XP_057783522.1`	Pfam	`PF30468`	CIP7_M	Domain	1	63	2.8e-30	106.1	CIP7 middle helical domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057927536.1
CCAAAATAAAATTAATTCAACATTTTGATTTTTGCATCATCCATACACTGACACACTTTTCTATATACGTACACATTGTTGTCTCTATCACCGCTCTTTTCCGCTTCCCCCCCTCTCTCTCTCTCACACACACACTCACACTCGAATTACACAATATGGCAAGAGTACTAGTGTAACTAATATGCGTCCACTTGTAAATGCAGGCATTTATTTTGCGGCGAGATCTGAAGCAGTAGTGAGGGAAGCCGCTCGAAAGTATG...

XM_057927533.1
TACACTGACACACTTTTCTATATACGTACACATTGTTGTCTCTATCACCGCTCTTTTCCGCTTCCCCCCCTCTCTCTCTCTCACACACACACTCACACTCGAATTACACAATATGGCAAGAGTACTAGTGTAACTAATATGCGTCCACTTGTAAATGCAGGCATTTATTTTGCGGCGAGATCTGAAGCAGTAGTGAGGGAAGCCGCTCGAAAGTATGAAGCAGAGCACTCGTCTCAGCTCGGCTGTTTTTCAGCTTACTC...

CDS

7 records

下载 CDS FASTA

LOC131001213
ATGAAGCAGAGCACTCGTCTCAGCTCGGCTGTTTTTCAGCTTACTCCAACTCGGACGAGGTGTGATTTGATTATCATAGCAAATGACAGGAAAGAGAAAATTGCTACTGGATTGCTAAATCCATTTCTTGCACACCTAAAGACTGCCCAAGATCAAATTGATAAAGGTGGTTATTCAATTTTGCTTGAACCAGAAACCGGAAGTGATTCATCCTGGTTTACAAAGGCCACTTTGGAAAGGTTTGTTCGTTTTGTGAGCAC...

Protein

7 records

下载 Protein FASTA

XP_057783516.1
MKQSTRLSSAVFQLTPTRTRCDLIIIANDRKEKIATGLLNPFLAHLKTAQDQIDKGGYSILLEPETGSDSSWFTKATLERFVRFVSTPEILERVYTIETEILHIGEAIALQNCNDIGQSIVENHRRKSLGGYEGGKSVPNANDEKAIVLYTPGVLPPEADGSCSQEENSKVQLLKVLETRKTALQKEQGMAFARAVAAGFDIDHVAALVSFAECFGAMRLMEACSRFIDLWKCKHETGQWLDIDASEALSPQPNFSAVKA...

XP_057783517.1
MKQSTRLSSAVFQLTPTRTRCDLIIIANDRKEKIATGLLNPFLAHLKTAQDQIDKGGYSILLEPETGSDSSWFTKATLERFVRFVSTPEILERVYTIETEILHIGEAIALQNCNDIGQSIVENHRRKSLGGYEGGKSVPNANDEKAIVLYTPGVLPPEADGSCSQEENSKVQLLKVLETRKTALQKEQGMAFARAVAAGFDIDHVAALVSFAECFGAMRLMEACSRFIDLWKCKHETGQWLDIDASEALSPQPNFSAVKA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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