当前解析结果
SmilChr08G001670| 统一新 Gene ID | SmilChr08G001670 |
|---|---|
| 名称 | SmilChr08G001670 |
| 描述 | kinesin-like protein KIN-10A |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 13930931 - 13934514 / - |
| NCBI Gene ID | LOC131001215 |
|---|---|
| GeneID | 131001215 |
| locus_tag | - |
| NCBI Name | LOC131001215 |
| 原始查询 | SmilChr08G001670 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-10A |
| 产物 | kinesin-like protein KIN-10A |
| Arabidopsis | AT4G14330 (AT4G14330)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827075] identity=55.7; qcov=1.03; evalue=0; confidence=high |
| Rice | Os02g0810200 (STD1)- identity=47.3; qcov=1.05; evalue=0; confidence=high |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0005871 (kinesin complex); GO:0005874 (microtubule); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF00225 (Kinesin); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001215 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057783523.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057783523.1 |
| 3 | Phragmoplast | Phragmoplast | 0.60000 | XP_057783523.1 |
| 4 | Nucleus | 细胞核 | 0.20000 | XP_057783523.1 |
| 5 | Nucleus membrane | 核膜 | 0.20000 | XP_057783523.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:13931148 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:13931182 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B114,B66,B8,C37 |
Chr8:13931392 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr8:13931573 |
ACC |
A |
2bp_deletion | frameshift_variant | 22 | A1,A14,A25,B114,B2,B21,B27,B32,B52,B55,B59,B66,B8,C11,C17,C23,C29,C37,C5,C62,C69,D10 |
Chr8:13931578 |
TAA |
T |
2bp_deletion | frameshift_variant | 22 | A1,A14,A25,B114,B2,B21,B27,B32,B52,B55,B59,B66,B8,C11,C17,C23,C29,C37,C5,C62,C69,D10 |
Chr8:13931600 |
T |
TC |
1bp_insertion | frameshift_variant | 22 | A1,A14,A25,B114,B2,B21,B27,B32,B52,B55,B59,B66,B8,C11,C17,C23,C29,C37,C5,C62,C69,D10 |
Chr8:13931645 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:13931657 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr8:13931662 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:13931730 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B115 |
Chr8:13931806 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,C19 |
Chr8:13931887 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057783523.1PF00225
Kinesin 78-374 aa
PF16796
Microtub_bd 109-189 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783523.1 |
Pfam | PF00225 |
Kinesin | Domain | 78 | 374 | 1.1e-60 | 206.1 | Kinesin motor domain |
XP_057783523.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 109 | 189 | 2.3e-08 | 34.8 | Microtubule binding |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。