当前解析结果
SmilChr08G001715| 统一新 Gene ID | SmilChr08G001715 |
|---|---|
| 名称 | SmilChr08G001715 |
| 描述 | beta-glucuronosyltransferase GlcAT14A |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 14380085 - 14383713 / + |
| NCBI Gene ID | LOC131001260 |
|---|---|
| GeneID | 131001260 |
| locus_tag | - |
| NCBI Name | LOC131001260 |
| 原始查询 | SmilChr08G001715 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-glucuronosyltransferase GlcAT14A |
| 产物 | beta-glucuronosyltransferase GlcAT14A |
| Arabidopsis | AT3G24040 (AT3G24040)Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:821989] identity=58.2; qcov=0.918; evalue=5.67e-160; confidence=high |
| Rice | Os12g0639700- identity=48.4; qcov=0.823; evalue=1.39e-111; confidence=high |
| GO | GO:0015020 (glucuronosyltransferase activity); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF02485 (Branch) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001260 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057783581.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057783581.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057783581.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057783581.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057783581.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:14380954 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C53 |
Chr8:14380954 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C53 |
Chr8:14381042 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,C24,C56 |
Chr8:14382673 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B82,C20,C48 |
Chr8:14383224 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr8:14383302 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B23,B87,C18,C46 |
Chr8:14383384 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C43,C45 |
Chr8:14383519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C4,C75,D6 |
Chr8:14383587 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B120,B36 |
Chr8:14383588 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B50,C25,C86 |
Chr8:14383606 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B121,B70,C16 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057783581.1PF02485
Branch 75-317 aa
XP_057783582.1PF02485
Branch 75-316 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783581.1 |
Pfam | PF02485 |
Branch | Family | 75 | 317 | 2.9e-54 | 185.0 | Core-2/I-Branching enzyme |
XP_057783582.1 |
Pfam | PF02485 |
Branch | Family | 75 | 316 | 1.6e-56 | 192.4 | Core-2/I-Branching enzyme |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。