当前解析结果
SmilChr08G001727| 统一新 Gene ID | SmilChr08G001727 |
|---|---|
| 名称 | SmilChr08G001727 |
| 描述 | probable pectate lyase 8 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 14503170 - 14506808 / - |
| NCBI Gene ID | LOC131001271 |
|---|---|
| GeneID | 131001271 |
| locus_tag | - |
| NCBI Name | LOC131001271 |
| 原始查询 | SmilChr08G001727 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable pectate lyase 8 |
| 产物 | probable pectate lyase 8 |
| Arabidopsis | AT4G13710 (AT4G13710)Pectin lyase-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827005] identity=79.5; qcov=0.966; evalue=0; confidence=high |
| Rice | Os04g0137201 (OsPLL4.2)- identity=86.4; qcov=0.858; evalue=0; confidence=high |
| GO | GO:0030570 (pectate lyase activity) |
| KEGG | smil00040 (Pentose and glucuronate interconversions - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00544 (Pectate_lyase_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001271 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057783596.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057783596.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057783596.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057783596.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057783596.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:14503706 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B125,C72 |
Chr8:14503802 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B27,C64 |
Chr8:14504060 |
T |
TG |
1bp_insertion | frameshift_variant | 223 | A1,A10,A11,A13,A14,A15,A16,A18,A19,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A9,B10,B100,B102,B103,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B119,B12,B120,B121,B122,B124,B125,B128,B13,B130,B132,B133,B134,B135,B136,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B22,B23,B24,B25,B26,B28,B29,B3,B30,B31,B32,B33,B35,B39,B4,B40,B41,B42,B43,B45,B46,B47,B48,B5,B50,B51,B52,B53,B54,B55,B57,B58,B59,B60,B61,B62,B63,B64,B66,B67,B68,B69,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C73,C74,C75,C76,C77,C78,C79,C8,C81,C82,C84,C85,C86,C87,C9,D1,D10,D2,D4,D5,D6,D7,D8,D9 |
Chr8:14504066 |
CT |
C |
1bp_deletion | frameshift_variant | 225 | A1,A10,A11,A13,A14,A15,A16,A18,A19,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A9,B1,B10,B100,B102,B103,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B122,B123,B124,B125,B128,B13,B130,B132,B133,B134,B135,B136,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B22,B23,B24,B25,B26,B28,B29,B3,B30,B31,B32,B33,B35,B39,B4,B40,B41,B42,B43,B45,B46,B47,B48,B5,B50,B51,B52,B53,B54,B55,B57,B58,B59,B6,B60,B61,B62,B63,B64,B66,B67,B68,B69,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C23,C24,C25,C26,C27,C28,C29,C3,C30,C32,C33,C34,C35,C36,C37,C38,C39,C4,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C73,C74,C75,C76,C77,C78,C79,C8,C81,C82,C84,C85,C86,C87,C9,D1,D10,D2,D4,D5,D6,D7,D8,D9 |
Chr8:14504316 |
A |
ACC |
2bp_insertion | frameshift_variant | 168 | A1,A10,A15,A2,A22,A23,A25,A4,A5,A8,B1,B102,B103,B104,B105,B106,B109,B11,B111,B112,B114,B117,B118,B119,B122,B123,B124,B125,B127,B128,B130,B134,B137,B138,B139,B14,B140,B15,B16,B17,B18,B2,B20,B21,B23,B24,B25,B26,B27,B28,B29,B3,B34,B35,B38,B4,B41,B42,B44,B45,B49,B5,B51,B53,B54,B56,B58,B6,B61,B62,B63,B64,B65,B66,B67,B68,B70,B71,B73,B75,B76,B77,B79,B8,B80,B81,B82,B83,B86,B87,B88,B89,B9,B90,B93,B95,B97,B98,C10,C13,C16,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C3,C30,C32,C33,C34,C35,C37,C38,C4,C40,C42,C43,C44,C45,C46,C47,C48,C49,C5,C51,C54,C55,C56,C58,C59,C6,C60,C62,C63,C64,C66,C7,C70,C71,C72,C73,C75,C78,C8,C80,C81,C82,C83,C86,C87,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8 |
Chr8:14504318 |
A |
ATT |
2bp_insertion | frameshift_variant | 1 | C45 |
Chr8:14504318 |
A |
ATT |
2bp_insertion | CDS_variant | 1 | C45 |
Chr8:14504323 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
Chr8:14504403 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B74,C2 |
Chr8:14504560 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B139,B73 |
Chr8:14504595 |
AT |
A |
1bp_deletion | frameshift_variant | 185 | A1,A10,A11,A13,A14,A16,A18,A19,A2,A20,A21,A22,A23,A25,A4,A6,A8,A9,B1,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B117,B118,B119,B12,B120,B122,B124,B126,B127,B128,B129,B13,B131,B132,B133,B134,B139,B14,B16,B2,B20,B21,B22,B23,B24,B25,B27,B28,B29,B30,B31,B32,B33,B36,B37,B39,B4,B40,B42,B43,B46,B5,B50,B51,B52,B53,B55,B56,B57,B59,B60,B61,B63,B64,B65,B66,B67,B68,B69,B7,B70,B72,B73,B74,B75,B76,B77,B79,B80,B81,B82,B84,B85,B86,B87,B88,B89,B90,B95,B98,C1,C10,C13,C15,C16,C17,C18,C19,C20,C21,C22,C23,C24,C25,C27,C28,C29,C30,C31,C34,C35,C36,C38,C39,C4,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C54,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C70,C71,C72,C74,C75,C78,C8,C81,C84,C87,C9,D1,D11,D2,D3,D5,D6,D7,D8,D9 |
Chr8:14504704 |
CCA |
C |
2bp_deletion | frameshift_variant | 1 | B19 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783596.1PF00544
Pectate_lyase_4 179-378 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783596.1 |
Pfam | PF00544 |
Pectate_lyase_4 | Repeat | 179 | 378 | 4.9e-20 | 72.6 | Pectate lyase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。