Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001744`

染色体: Chr08 坐标: 14670246-14678571 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001744`
名称	SmilChr08G001744
描述	uncharacterized SmilChr08G001744
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	14670246 - 14678571 / `+`

ID 对照

NCBI Gene ID	`LOC131001289`
GeneID	`131001289`
locus_tag	`-`
NCBI Name	`LOC131001289`
原始查询	`SmilChr08G001744`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os10g0473400; species=rice; confidence=high
产物	hit=Os10g0473400; species=rice; confidence=high
Arabidopsis	`AT3G24180` (AT3G24180) Beta-glucosidase, GBA2 type family protein [Source:NCBI gene (formerly Entrezgene);Acc:822004] identity=72.8; qcov=1; evalue=0; confidence=high
Rice	`Os10g0473400` - identity=72; qcov=1.01; evalue=0; confidence=high
GO	GO:0004348 (glucosylceramidase activity); GO:0005975 (carbohydrate metabolic process); GO:0006680 (glucosylceramide catabolic process); GO:0008422 (beta-glucosidase activity); GO:0016020 (membrane)
KEGG	smil00511 (Other glycan degradation - Salvia miltiorrhiza (redroot sage)); smil00600 (Sphingolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04382 (Cornified envelope formation - Salvia miltiorrhiza (redroot sage))
Pfam	PF04685 (GH116_catalytic); PF12215 (Glyco_hydr_116N)
InterPro	-
eggNOG	-
NR	GeneID:131001289

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057783619.1`
2	Cytoplasm	细胞质	0.40000	`XP_057783619.1`
3	Endoplasmic reticulum	内质网	0.40000	`XP_057783619.1`
4	Lipid droplet	脂滴	0.20000	`XP_057783619.1`
5	Nucleus	细胞核	0.00000	`XP_057783619.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:14672108`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B120,B13,C41
`Chr8:14672452`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr8:14673828`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C64,C66,C8,D7
`Chr8:14674946`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr8:14675545`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr8:14676648`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr8:14677005`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr8:14677212`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr8:14677382`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr8:14677671`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B24,B99,C87
`Chr8:14677925`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B120,B13,C41
`Chr8:14678015`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783619.1

971 aa

486

971

Glyco_hydr_116N

GH116_catalytic

PF12215 Glyco_hydr_116N 102-421 aa PF04685 GH116_catalytic 556-917 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783619.1`	Pfam	`PF12215`	Glyco_hydr_116N	Family	102	421	5.6e-107	358.6	beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
`XP_057783619.1`	Pfam	`PF04685`	GH116_catalytic	Repeat	556	917	1.2e-162	542.0	Glycosyl-hydrolase family 116, catalytic region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009093897.1
AACCAAAATGGGAAGTGAACAGCAAACCACTAAAATGGCGTCTTTTTTCAACAATTTCCATCCAAGACTGATGCAATCATATGATGCAACTACAAAACAAGTCAACTTTTTTACATACCTTAAATCTTGCTATTTCCAATTCATCTCTCTCTCTTTACCCCCTAAGAACTACAGAAGCCTTTCACCAGATTATATATATAGTAAGAGAGAAGGAGAGGAGAGAGAGAGGCGGAGTTGCAGGCTTGAGGTGGTAGTGTACG...

XM_057927636.1
GAAAGAGAGAGAATTAGTTGGACTGCGCCAACCAAAATGGGAAGTGAACAGCAAACCACTAAAATGGCGTCTTTTTTCAACAATTTCCATCCAAGACTGATGCAATCATATGATGCAACTACAAAACAAGTCAACTTTTTTACATACCTTAAATCTTGCTATTTCCAATTCATCTCTCTCTCTTTACCCCCTAAGAACTACAGAAGCCTTTCACCAGATTATATATATAGTAAGAGAGAAGGAGAGGAGAGAGAGAGGCG...

CDS

1 records

下载 CDS FASTA

LOC131001289
ATGGTGGGTGCAAATCTTTTTCATTATAGAAAAAATTCATGGCCGCCGGAAGAATACATTAATCGAGCAACTTTGCAGTTGTTTGATATCGAAGGTGCTGCCCCTCCCGAACACGCATTGAGAAGAAAATTAAACAGCCATGCCAGCATCCTTAAAGAATTCAGCATCACATTTAGAGAAGCCATACAAATGATTCGACTTGGAATACGACTATGGCATTACGTTAGGGAAGAAGCATCCCATGGAAGAAAAGCGCCCAT...

Protein

1 records

下载 Protein FASTA

XP_057783619.1
MVGANLFHYRKNSWPPEEYINRATLQLFDIEGAAPPEHALRRKLNSHASILKEFSITFREAIQMIRLGIRLWHYVREEASHGRKAPIDPFTREHCKPSASQGVPLGGMGSGSISRGFRGEFRHFQILPGTCETSPVMANQFSIFISRDGGNKKYSSVLSPGRHEGLGKPSDQGISSWGWNLNGQHSTYHALFPRAWTVYDGEPDPELKISCRQISPFIPHNYRESSLPTSVFVYTLVNTGKERAKVSLLFTWANSIGGTS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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