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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G001745

染色体: Chr08 坐标: 14680741-14688167 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G001745
名称SmilChr08G001745
描述glutathione reductase, chloroplastic-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向14680741 - 14688167 / +

ID 对照

NCBI Gene IDLOC131001290
GeneID131001290
locus_tag-
NCBI NameLOC131001290
原始查询SmilChr08G001745

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述glutathione reductase, chloroplastic-like
产物glutathione reductase%2C chloroplastic-like
ArabidopsisAT3G24170 (GR1)
glutathione-disulfide reductase [Source:NCBI gene (formerly Entrezgene);Acc:822003]
identity=77.7; qcov=1; evalue=0; confidence=high
RiceOs02g0813500 (OsGR2)
-
identity=72.3; qcov=0.996; evalue=0; confidence=high
GOGO:0004362 (glutathione-disulfide reductase (NADPH) activity); GO:0005739 (mitochondrion); GO:0005829 (cytosol); GO:0006749 (glutathione metabolic process); GO:0034599 (cellular response to oxidative stress); GO:0045454 (cell redox homeostasis); GO:0050660 (flavin adenine dinucleotide binding); GO:0050661 (NADP binding)
KEGGsmil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
PfamPF00070 (Pyr_redox); PF02852 (Pyr_redox_dim); PF07992 (Pyr_redox_2); PF13738 (Pyr_redox_3)
InterPro-
eggNOG-
NRGeneID:131001290

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057783620.1
2 Cytosol 细胞质基质 0.40000 XP_057783620.1
3 Mitochondrion 线粒体 0.20000 XP_057783620.1
4 Nucleus 细胞核 0.00000 XP_057783621.1
5 Chromosome 染色体 0.00000 XP_057783621.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:14681508 G A EMS_canonical_SNV CDS_variant 4 B106,B48,B73,B89
Chr8:14681551 G A EMS_canonical_SNV CDS_variant 1 B2
Chr8:14684009 G A EMS_canonical_SNV CDS_variant 1 B52
Chr8:14684026 G A EMS_canonical_SNV CDS_variant 1 C19
Chr8:14686591 G A EMS_canonical_SNV CDS_variant 3 C64,C66,C8
Chr8:14687192 C T EMS_canonical_SNV CDS_variant 3 C64,C66,C8
Chr8:14687207 G A EMS_canonical_SNV CDS_variant 1 B12
Chr8:14687733 C CTT 2bp_insertion frameshift_variant 16 A16,B101,B120,B13,B16,B22,B35,B41,B47,B51,B6,B88,C41,C53,C86,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783620.1
521 aa
N
1
260
521
Pyr_redox_2
Pyr_redox_3
Pyr_redox
Pyr_redox_dim
C
PF07992 Pyr_redox_2 23-351 aa PF13738 Pyr_redox_3 153-335 aa PF00070 Pyr_redox 202-275 aa PF02852 Pyr_redox_dim 371-469 aa
XP_057783621.1
497 aa
N
1
248
497
Pyr_redox_2
Pyr_redox_3
Pyr_redox
Pyr_redox_dim
C
PF07992 Pyr_redox_2 23-351 aa PF13738 Pyr_redox_3 153-335 aa PF00070 Pyr_redox 202-275 aa PF02852 Pyr_redox_dim 371-480 aa
XP_057783622.1
497 aa
N
1
248
497
Pyr_redox_2
Pyr_redox_3
Pyr_redox
Pyr_redox_dim
C
PF07992 Pyr_redox_2 23-351 aa PF13738 Pyr_redox_3 153-335 aa PF00070 Pyr_redox 202-275 aa PF02852 Pyr_redox_dim 371-480 aa
XP_057783623.1
497 aa
N
1
248
497
Pyr_redox_2
Pyr_redox_3
Pyr_redox
Pyr_redox_dim
C
PF07992 Pyr_redox_2 23-351 aa PF13738 Pyr_redox_3 153-335 aa PF00070 Pyr_redox 202-275 aa PF02852 Pyr_redox_dim 371-480 aa
XP_057783624.1
497 aa
N
1
248
497
Pyr_redox_2
Pyr_redox_3
Pyr_redox
Pyr_redox_dim
C
PF07992 Pyr_redox_2 23-351 aa PF13738 Pyr_redox_3 153-335 aa PF00070 Pyr_redox 202-275 aa PF02852 Pyr_redox_dim 371-480 aa
XP_057783625.1
497 aa
N
1
248
497
Pyr_redox_2
Pyr_redox_3
Pyr_redox
Pyr_redox_dim
C
PF07992 Pyr_redox_2 23-351 aa PF13738 Pyr_redox_3 153-335 aa PF00070 Pyr_redox 202-275 aa PF02852 Pyr_redox_dim 371-480 aa
XP_057783626.1
497 aa
N
1
248
497
Pyr_redox_2
Pyr_redox_3
Pyr_redox
Pyr_redox_dim
C
PF07992 Pyr_redox_2 23-351 aa PF13738 Pyr_redox_3 153-335 aa PF00070 Pyr_redox 202-275 aa PF02852 Pyr_redox_dim 371-480 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057783620.1 Pfam PF07992 Pyr_redox_2 Domain 23 351 6e-65 220.3 Pyridine nucleotide-disulphide oxidoreductase
XP_057783620.1 Pfam PF13738 Pyr_redox_3 Family 153 335 1.3e-10 41.8 Pyridine nucleotide-disulphide oxidoreductase
XP_057783620.1 Pfam PF00070 Pyr_redox Domain 202 275 6.8e-20 72.1 Pyridine nucleotide-disulphide oxidoreductase
XP_057783620.1 Pfam PF02852 Pyr_redox_dim Domain 371 469 4e-26 92.1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
XP_057783621.1 Pfam PF07992 Pyr_redox_2 Domain 23 351 5.3e-65 220.4 Pyridine nucleotide-disulphide oxidoreductase
XP_057783621.1 Pfam PF13738 Pyr_redox_3 Family 153 335 1.2e-10 41.9 Pyridine nucleotide-disulphide oxidoreductase
XP_057783621.1 Pfam PF00070 Pyr_redox Domain 202 275 5.9e-20 72.3 Pyridine nucleotide-disulphide oxidoreductase
XP_057783621.1 Pfam PF02852 Pyr_redox_dim Domain 371 480 8.1e-32 110.4 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
XP_057783622.1 Pfam PF07992 Pyr_redox_2 Domain 23 351 5.3e-65 220.4 Pyridine nucleotide-disulphide oxidoreductase
XP_057783622.1 Pfam PF13738 Pyr_redox_3 Family 153 335 1.2e-10 41.9 Pyridine nucleotide-disulphide oxidoreductase
XP_057783622.1 Pfam PF00070 Pyr_redox Domain 202 275 5.9e-20 72.3 Pyridine nucleotide-disulphide oxidoreductase
XP_057783622.1 Pfam PF02852 Pyr_redox_dim Domain 371 480 8.1e-32 110.4 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
XP_057783623.1 Pfam PF07992 Pyr_redox_2 Domain 23 351 5.3e-65 220.4 Pyridine nucleotide-disulphide oxidoreductase
XP_057783623.1 Pfam PF13738 Pyr_redox_3 Family 153 335 1.2e-10 41.9 Pyridine nucleotide-disulphide oxidoreductase
XP_057783623.1 Pfam PF00070 Pyr_redox Domain 202 275 5.9e-20 72.3 Pyridine nucleotide-disulphide oxidoreductase
XP_057783623.1 Pfam PF02852 Pyr_redox_dim Domain 371 480 8.1e-32 110.4 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
XP_057783624.1 Pfam PF07992 Pyr_redox_2 Domain 23 351 5.3e-65 220.4 Pyridine nucleotide-disulphide oxidoreductase
XP_057783624.1 Pfam PF13738 Pyr_redox_3 Family 153 335 1.2e-10 41.9 Pyridine nucleotide-disulphide oxidoreductase
XP_057783624.1 Pfam PF00070 Pyr_redox Domain 202 275 5.9e-20 72.3 Pyridine nucleotide-disulphide oxidoreductase
XP_057783624.1 Pfam PF02852 Pyr_redox_dim Domain 371 480 8.1e-32 110.4 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
XP_057783625.1 Pfam PF07992 Pyr_redox_2 Domain 23 351 5.3e-65 220.4 Pyridine nucleotide-disulphide oxidoreductase
XP_057783625.1 Pfam PF13738 Pyr_redox_3 Family 153 335 1.2e-10 41.9 Pyridine nucleotide-disulphide oxidoreductase
XP_057783625.1 Pfam PF00070 Pyr_redox Domain 202 275 5.9e-20 72.3 Pyridine nucleotide-disulphide oxidoreductase
XP_057783625.1 Pfam PF02852 Pyr_redox_dim Domain 371 480 8.1e-32 110.4 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
XP_057783626.1 Pfam PF07992 Pyr_redox_2 Domain 23 351 5.3e-65 220.4 Pyridine nucleotide-disulphide oxidoreductase
XP_057783626.1 Pfam PF13738 Pyr_redox_3 Family 153 335 1.2e-10 41.9 Pyridine nucleotide-disulphide oxidoreductase
XP_057783626.1 Pfam PF00070 Pyr_redox Domain 202 275 5.9e-20 72.3 Pyridine nucleotide-disulphide oxidoreductase
XP_057783626.1 Pfam PF02852 Pyr_redox_dim Domain 371 480 8.1e-32 110.4 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA
XM_057927637.1
CCATCCATTCTATTCCATTCCTCTTACTTTGTAGCATTAGTGCCAACAGCTTTCAGTGGGACAAATCAACAAACATCTGTCATACCCATTTCTGTCGTCATCACATTCAATTTTGCTAATGAAATTCTAAACTTGCGCCTCACAAAGTTACCTTTATGCTCTGTTTTACTCTATTTAATAACCCATTAATTATCTGATACTTTGTTCCATTTCTTTCCCCAAGATTTGTCCAGATCAATATTGGACATTGTTCTCTTTTG...
XM_057927639.1
CCATTCTATTCCATTCCTCTTACTTTGTAGCATTAGTGCCAACAGCTTTCAGTGGGACAAATCAACAAACATCTGTCATACCCATTTCTGTCGTCATCACATTCAATTTTGCTAATGAAATTCTAAACTTGCGCCTCACAAAGTTACCTTTATGCTCTGTTTTACTCTATTTAATAACCCATTAATTATCTGATACTTTGTTCCATTTCTTTCCCCAAGATTTGTCCAGATCAATATTGGACATTGTTCTCTTTTGGAGC...

CDS

7 records

下载 CDS FASTA
LOC131001290
ATGACGAGGAAGATGCTAGGTGATGGGGATCTGGATGAATCTAATGAAGGGGAGGCTCTTTACGACTTCGATTTGTTTGTGATTGGGGCAGGAAGTGGAGGAGTTCGTGCCTCGCGATTCTCTGCTCAGTATGGAGCTAAGGTTGGGATCTGTGAGCTTCCATTTCATCCTATCAGCTCTGAAGTTATAGGAGGAGTTGGCGGAACGTGTGTCATTCGTGGTTGTGTTCCCAAAAAGATTTTATTTTATGGTGCTTCTTT...
LOC131001290
ATGACGAGGAAGATGCTAGGTGATGGGGATCTGGATGAATCTAATGAAGGGGAGGCTCTTTACGACTTCGATTTGTTTGTGATTGGGGCAGGAAGTGGAGGAGTTCGTGCCTCGCGATTCTCTGCTCAGTATGGAGCTAAGGTTGGGATCTGTGAGCTTCCATTTCATCCTATCAGCTCTGAAGTTATAGGAGGAGTTGGCGGAACGTGTGTCATTCGTGGTTGTGTTCCCAAAAAGATTTTATTTTATGGTGCTTCTTT...

Protein

7 records

下载 Protein FASTA
XP_057783620.1
MTRKMLGDGDLDESNEGEALYDFDLFVIGAGSGGVRASRFSAQYGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILFYGASFGSDLEDARNYGWELNERIDFNWKKHLHKKTKEIVRLNGTYKRLLANAGVKLFEGEGRVAGPNDVEVIQIDGTKLRYSAKHILISTGSRAQRPDIPGQELAITSDEALSLEELPKRAVILGGGYIALEFASIWRGMGVAVDLCFRKELPLRGFDNEMRALVARNLEARGITMHP...
XP_057783621.1
MTRKMLGDGDLDESNEGEALYDFDLFVIGAGSGGVRASRFSAQYGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILFYGASFGSDLEDARNYGWELNERIDFNWKKHLHKKTKEIVRLNGTYKRLLANAGVKLFEGEGRVAGPNDVEVIQIDGTKLRYSAKHILISTGSRAQRPDIPGQELAITSDEALSLEELPKRAVILGGGYIALEFASIWRGMGVAVDLCFRKELPLRGFDNEMRALVARNLEARGITMHP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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