Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G001756

染色体: Chr08 坐标: 14764817-14770083 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G001756
名称SmilChr08G001756
描述uncharacterized SmilChr08G001756
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向14764817 - 14770083 / -

ID 对照

NCBI Gene IDLOC131001299
GeneID131001299
locus_tag-
NCBI NameLOC131001299
原始查询SmilChr08G001756

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185) [Source:NCBI gene (formerly Entrezgene);Acc:839386]; symbol=AT1G04900; hit=AT1G04900; species=arabidopsis; confidence=high
产物NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185) [Source:NCBI gene (formerly Entrezgene);Acc:839386]; symbol=AT1G04900; hit=AT1G04900; species=arabidopsis; confidence=high
ArabidopsisAT1G04900 (AT1G04900)
NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185) [Source:NCBI gene (formerly Entrezgene);Acc:839386]
identity=73.6; qcov=0.95; evalue=0; confidence=high
RiceOs01g0911900
-
identity=64.6; qcov=1.01; evalue=0; confidence=high
GOGO:0005739 (mitochondrion); GO:0035243 (protein-arginine omega-N symmetric methyltransferase activity)
KEGG-
PfamPF02636 (Methyltransf_28)
InterPro-
eggNOG-
NRGeneID:131001299

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057783636.1
2 Mitochondrion matrix 线粒体基质 0.20000 XP_057783636.1
3 Nucleus 细胞核 0.00000 XP_057783636.1
4 Chromosome 染色体 0.00000 XP_057783636.1
5 Centromere 着丝粒 0.00000 XP_057783636.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:14765186 C T EMS_canonical_SNV CDS_variant 5 A10,A7,B135,B40,C33
Chr8:14765213 C T EMS_canonical_SNV CDS_variant 2 B71,C80
Chr8:14765226 C T EMS_canonical_SNV CDS_variant 1 C9
Chr8:14765247 G A EMS_canonical_SNV CDS_variant 1 B13
Chr8:14765440 C T EMS_canonical_SNV CDS_variant 3 C11,C69,D4
Chr8:14766356 G A EMS_canonical_SNV CDS_variant 1 D11
Chr8:14766363 C T EMS_canonical_SNV CDS_variant 5 A10,A7,B135,B40,C33
Chr8:14767179 G A EMS_canonical_SNV CDS_variant 2 A8,B68
Chr8:14769569 T TA 1bp_insertion frameshift_variant 1 B65
Chr8:14769569 T TA 1bp_insertion CDS_variant 1 B65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057783636.1
443 aa
N
1
222
443
Methyltransf_28
C
PF02636 Methyltransf_28 123-379 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057783636.1 Pfam PF02636 Methyltransf_28 Family 123 379 4.8e-31 108.8 Putative S-adenosyl-L-methionine-dependent methyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057927653.1
AACCTCAGGAAGTCGCGTTTCTTCAATGGTTTCTCTCTCGACAAAACCCCGCTGAGAGAAACACAGAAAATGAAGTGTAAAGTGTAGACGAACAAGCTAAAACAGGGGATGATAACAAATTAATCGTTGAAAAGAGTGCAGAAATGGCCGCTCGCATTGCCGCCTCCAAACCCCTCTCCTCCTTCCTTTTCTCTTCTAAAGTGAACCCATTTTCCCCGGCCTACTTCTCCACAAACTTTGTTGGTGAATCCCCAATTCTT...

CDS

1 records

下载 CDS FASTA
LOC131001299
ATGGCCGCTCGCATTGCCGCCTCCAAACCCCTCTCCTCCTTCCTTTTCTCTTCTAAAGTGAACCCATTTTCCCCGGCCTACTTCTCCACAAACTTTGTTGGTGAATCCCCAATTCTTGCTAGGGATTTTATTCGTGCGGCTTTGTATGATCCGGAACATGGGTATTTTTCTCAAAGATCGGGCTCAGTTGGAGTGCTTGATCGAAGCATTAAGTTCAATCAGCTCGACGGCCGGAAAGCTTACACGAAGCATGTGAATGC...

Protein

1 records

下载 Protein FASTA
XP_057783636.1
MAARIAASKPLSSFLFSSKVNPFSPAYFSTNFVGESPILARDFIRAALYDPEHGYFSQRSGSVGVLDRSIKFNQLDGRKAYTKHVNAIYKQSDISWFTPVELFKPWYAHGIAEAILRTTNLSVPLKIYEIGGGSGTCARGVMDYIKVNAPSRIYDSMQYISVEISPSLAKKQLETVGEVSSHSKKFRVECRDAADPSGWGCEQQPCWVIMLEVLDNLPHDLIYSKDQVSPWMEVWVEKRHDKGELSELYKPLEDPLIESC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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