Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001765`

染色体: Chr08 坐标: 14868018-14872149 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001765`
名称	SmilChr08G001765
描述	glutathione S-transferase 2-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	14868018 - 14872149 / `-`

ID 对照

NCBI Gene ID	`LOC131001309`
GeneID	`131001309`
locus_tag	`-`
NCBI Name	`LOC131001309`
原始查询	`SmilChr08G001765`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glutathione S-transferase 2-like
产物	glutathione S-transferase 2-like
Arabidopsis	`AT2G02390` (GSTZ1) glutathione S-transferase zeta 1 [Source:NCBI gene (formerly Entrezgene);Acc:814770] identity=60.5; qcov=0.784; evalue=6.3e-94; confidence=high
Rice	`Os02g0564000` (OsGSTZ3) - identity=55.4; qcov=0.828; evalue=3.19e-86; confidence=high
GO	GO:0004364 (glutathione transferase activity); GO:0005737 (cytoplasm); GO:0006559 (L-phenylalanine catabolic process); GO:0006749 (glutathione metabolic process); GO:0016034 (maleylacetoacetate isomerase activity)
KEGG	smil00350 (Tyrosine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF02798 (GST_N); PF13409 (GST_N_2); PF13417 (GST_N_3); PF14497 (GST_C_3)
InterPro	-
eggNOG	-
NR	GeneID:131001309

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057783650.1`
2	Nucleus	细胞核	0.00000	`XP_057783650.1`
3	Chromosome	染色体	0.00000	`XP_057783650.1`
4	Centromere	着丝粒	0.00000	`XP_057783650.1`
5	Chromatin	染色质	0.00000	`XP_057783650.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:14869141`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B123,B72,B80,C37,D2
`Chr8:14869536`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B105
`Chr8:14869537`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr8:14869552`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C64,C65,C8
`Chr8:14871795`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B2,B25,C85
`Chr8:14871878`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:14872041`	`C`	`CT`	1bp_insertion	frameshift_variant	1	B88
`Chr8:14872041`	`C`	`CT`	1bp_insertion	CDS_variant	1	B88
`Chr8:14872065`	`GGC`	`G`	2bp_deletion	frameshift_variant	1	B120
`Chr8:14872065`	`GGC`	`G`	2bp_deletion	CDS_variant	1	B120
`Chr8:14872069`	`G`	`GTT`	2bp_insertion	frameshift_variant	32	A23,B100,B107,B112,B121,B133,B24,B25,B27,B28,B38,B39,B50,B58,B66,B69,B88,B91,B94,B99,C24,C31,C59,C71,C74,C78,C79,C84,C85,C87,D3,D5
`Chr8:14872096`	`TG`	`T`	1bp_deletion	frameshift_variant	60	A23,A7,B100,B107,B11,B112,B12,B121,B127,B131,B133,B134,B137,B14,B2,B21,B24,B25,B27,B28,B3,B33,B38,B39,B4,B45,B50,B58,B59,B63,B66,B69,B88,B91,B94,B95,B99,C16,C17,C19,C24,C25,C26,C31,C36,C49,C55,C59,C62,C66,C71,C74,C78,C79,C81,C84,C85,C87,D3,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783650.1

268 aa

134

268

GST_N

GST_N_3

GST_N_2

GST_C_3

PF02798 GST_N 54-127 aa PF13417 GST_N_3 57-134 aa PF13409 GST_N_2 63-129 aa PF14497 GST_C_3 173-250 aa

XP_057783651.1

268 aa

134

268

GST_N

GST_N_3

GST_N_2

GST_C_3

PF02798 GST_N 54-127 aa PF13417 GST_N_3 57-134 aa PF13409 GST_N_2 63-129 aa PF14497 GST_C_3 173-250 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783650.1`	Pfam	`PF02798`	GST_N	Domain	54	127	8.9e-22	77.9	Glutathione S-transferase, N-terminal domain
`XP_057783650.1`	Pfam	`PF13417`	GST_N_3	Domain	57	134	2.5e-19	70.1	Glutathione S-transferase, N-terminal domain
`XP_057783650.1`	Pfam	`PF13409`	GST_N_2	Domain	63	129	2.9e-19	70.2	Glutathione S-transferase, N-terminal domain
`XP_057783650.1`	Pfam	`PF14497`	GST_C_3	Domain	173	250	5.8e-06	27.2	Glutathione S-transferase, C-terminal domain
`XP_057783651.1`	Pfam	`PF02798`	GST_N	Domain	54	127	8.9e-22	77.9	Glutathione S-transferase, N-terminal domain
`XP_057783651.1`	Pfam	`PF13417`	GST_N_3	Domain	57	134	2.5e-19	70.1	Glutathione S-transferase, N-terminal domain
`XP_057783651.1`	Pfam	`PF13409`	GST_N_2	Domain	63	129	2.9e-19	70.2	Glutathione S-transferase, N-terminal domain
`XP_057783651.1`	Pfam	`PF14497`	GST_C_3	Domain	173	250	5.8e-06	27.2	Glutathione S-transferase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009093899.1
ATAAACATATAAATTATTGAAATTAAAATGAGTTTATCCTGTATCAAAAAGACAAAAGAAAAAAGAAAAATTTATCCAAACAGCCTCTTTATCTTCTTTCTTCGGCAAGTGCAAAGTGGTGCTAAGAATTTGTTCATCGTTGAATCGAGTGCGATCATGACTAGCCACGCTATTGCGGAGCCGAACAAGCTGAAACTTTTCTCTTATTGGCGGAGCTCTTGCTCCTGCCGAGTACGAATTGCTCTCAACCTCAAGGGGCT...

XM_057927667.1
TAAACATATAAATTATTGAAATTAAAATGAGTTTATCCTGTATCAAAAAGACAAAAGAAAAAAGAAAAATTTATCCAAACAGCCTCTTTATCTTCTTTCTTCGGCAAGTGCAAAGTGGTGCTAAGAATTTGTTCATCGTTGAATCGAGTGCGATCATGACTAGCCACGCTATTGCGGAGCCGAACAAGCTGAAACTTTTCTCTTATTGGCGGAGCTCTTGCTCCTGCCGAGTACGAATTGCTCTCAACCTCAAGGGGCTG...

CDS

2 records

下载 CDS FASTA

LOC131001309
ATGAGTTTATCCTGTATCAAAAAGACAAAAGAAAAAAGAAAAATTTATCCAAACAGCCTCTTTATCTTCTTTCTTCGGCAAGTGCAAAGTGGTGCTAAGAATTTGTTCATCGTTGAATCGAGTGCGATCATGACTAGCCACGCTATTGCGGAGCCGAACAAGCTGAAACTTTTCTCTTATTGGCGGAGCTCTTGCTCCTGCCGAGTACGAATTGCTCTCAACCTCAAGGGGCTGGACTACGAGTACATAGCGATTAACTT...

Protein

2 records

下载 Protein FASTA

XP_057783650.1
MSLSCIKKTKEKRKIYPNSLFIFFLRQVQSGAKNLFIVESSAIMTSHAIAEPNKLKLFSYWRSSCSCRVRIALNLKGLDYEYIAINLLKGEHKSPDFLKLNPLGLVPVLIDGDTVVSDSLAILLYLEERYPQRPLLPQDLELKALNYQAANIVFASIQPYQNIPIIGYIKEKLGADEMLSWVQHHIKNGFAALEKLLEKHAGKYATGGEAFLADLYLAPQIDGAVRRFSVDMNEFPLLSKLNEAYKELPAFQDAMPGKQP...

XP_057783651.1
MSLSCIKKTKEKRKIYPNSLFIFFLRQVQSGAKNLFIVESSAIMTSHAIAEPNKLKLFSYWRSSCSCRVRIALNLKGLDYEYIAINLLKGEHKSPDFLKLNPLGLVPVLIDGDTVVSDSLAILLYLEERYPQRPLLPQDLELKALNYQAANIVFASIQPYQNIPIIGYIKEKLGADEMLSWVQHHIKNGFAALEKLLEKHAGKYATGGEAFLADLYLAPQIDGAVRRFSVDMNEFPLLSKLNEAYKELPAFQDAMPGKQP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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