当前解析结果
SmilChr08G001768| 统一新 Gene ID | SmilChr08G001768 |
|---|---|
| 名称 | SmilChr08G001768 |
| 描述 | KRR1 small subunit processome component homolog |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 14887974 - 14892684 / + |
| NCBI Gene ID | LOC131001311 |
|---|---|
| GeneID | 131001311 |
| locus_tag | - |
| NCBI Name | LOC131001311 |
| 原始查询 | SmilChr08G001768 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | KRR1 small subunit processome component homolog |
| 产物 | KRR1 small subunit processome component homolog |
| Arabidopsis | AT5G08420 (AT5G08420)RNA-binding KH domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:830741] identity=72; qcov=0.901; evalue=2.93e-164; confidence=high |
| Rice | Os10g0452800- identity=73.1; qcov=0.977; evalue=0; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0005730 (nucleolus); GO:0032040 (small-subunit processome) |
| KEGG | - |
| Pfam | PF17903 (KH_KRR1_1st); PF21800 (KH_KRR1_2nd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001311 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057783654.1 |
| 2 | Nucleolus | 核仁 | 1.00000 | XP_057783654.1 |
| 3 | Nucleolar fibrillar center | Nucleolar fibrillar center | 0.60000 | XP_057783654.1 |
| 4 | Nucleolus rim | Nucleolus rim | 0.40000 | XP_057783654.1 |
| 5 | Nucleoplasm | 核质 | 0.40000 | XP_057783654.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:14888027 |
GAA |
G |
2bp_deletion | frameshift_variant | 6 | A13,A18,B25,B53,C3,D7 |
Chr8:14888084 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,B34,B71,B75,B79 |
Chr8:14888180 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,B131,B63,B97 |
Chr8:14889071 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B133,C74,D3 |
Chr8:14890044 |
C |
CA |
1bp_insertion | frameshift_variant | 14 | A18,A3,B105,B119,B25,B35,B53,B6,B62,B84,C3,C42,D1,D7 |
Chr8:14890601 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B105,B53,B6,C39 |
Chr8:14890740 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B105,B140,B16,C39 |
Chr8:14890783 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B53,C82 |
Chr8:14891711 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C16,C40 |
Chr8:14891763 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B53,C82 |
Chr8:14892402 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr8:14892442 |
AG |
* |
1bp_deletion | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783654.1PF17903
KH_KRR1_1st 60-140 aa
PF21800
KH_KRR1_2nd 142-233 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783654.1 |
Pfam | PF17903 |
KH_KRR1_1st | Domain | 60 | 140 | 3.9e-31 | 107.8 | Krr1 KH1 domain |
XP_057783654.1 |
Pfam | PF21800 |
KH_KRR1_2nd | Domain | 142 | 233 | 4.4e-42 | 142.7 | KRR1 small subunit processome component, second KH domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。