当前解析结果
SmilChr08G001774| 统一新 Gene ID | SmilChr08G001774 |
|---|---|
| 名称 | SmilChr08G001774 |
| 描述 | uncharacterized SmilChr08G001774 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 14964123 - 14971700 / + |
| NCBI Gene ID | LOC131001316 |
|---|---|
| GeneID | 131001316 |
| locus_tag | - |
| NCBI Name | LOC131001316 |
| 原始查询 | SmilChr08G001774 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817731]; symbol=AT2G31740; hit=AT2G31740; species=arabidopsis; confidence=high |
| 产物 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817731]; symbol=AT2G31740; hit=AT2G31740; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G31740 (AT2G31740)S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817731] identity=51.8; qcov=1.01; evalue=0; confidence=high |
| Rice | Os04g0379300- identity=50.5; qcov=0.97; evalue=0; confidence=high |
| GO | GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity) |
| KEGG | - |
| Pfam | PF01564 (Spermine_synth); PF08241 (Methyltransf_11); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001316 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057783661.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057783661.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057783661.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057783661.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057783661.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:14964688 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:14965126 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B2,B25,C85 |
Chr8:14965393 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr8:14965926 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:14968991 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr8:14969089 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr8:14969284 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B12,C14 |
Chr8:14969391 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,C82 |
Chr8:14970367 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B120,C41 |
Chr8:14971182 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B52,B53,C82 |
Chr8:14971193 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B52,B53,C82 |
Chr8:14971199 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783661.1PF13847
Methyltransf_31 76-185 aa
PF13649
Methyltransf_25 78-178 aa
PF08241
Methyltransf_11 81-182 aa
PF01564
Spermine_synth 548-672 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783661.1 |
Pfam | PF13847 |
Methyltransf_31 | Domain | 76 | 185 | 1.9e-10 | 41.4 | Methyltransferase domain |
XP_057783661.1 |
Pfam | PF13649 |
Methyltransf_25 | Domain | 78 | 178 | 1.5e-14 | 55.1 | Methyltransferase domain |
XP_057783661.1 |
Pfam | PF08241 |
Methyltransf_11 | Domain | 81 | 182 | 5.1e-15 | 56.6 | Methyltransferase domain |
XP_057783661.1 |
Pfam | PF01564 |
Spermine_synth | Domain | 548 | 672 | 1.5e-08 | 35.1 | Spermine/spermidine synthase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。