当前解析结果
SmilChr08G001776| 统一新 Gene ID | SmilChr08G001776 |
|---|---|
| 名称 | SmilChr08G001776 |
| 描述 | protein ECERIFERUM 26-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 14978293 - 14979848 / - |
| NCBI Gene ID | LOC131001320 |
|---|---|
| GeneID | 131001320 |
| locus_tag | - |
| NCBI Name | LOC131001320 |
| 原始查询 | SmilChr08G001776 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein ECERIFERUM 26-like |
| 产物 | protein ECERIFERUM 26-like |
| Arabidopsis | AT4G13840 (AT4G13840)HXXXD-type acyl-transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827018] identity=40.1; qcov=1.01; evalue=2.09e-104; confidence=medium |
| Rice | Os04g0611200 (OsCER2)- identity=40; qcov=1.02; evalue=1.24e-88; confidence=medium |
| GO | GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups) |
| KEGG | - |
| Pfam | PF02458 (Transferase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001320 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057783664.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057783664.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057783664.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057783664.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057783664.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:14978414 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr8:14978590 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,C82 |
Chr8:14978919 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C60,C84 |
Chr8:14979022 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B109,B41,B65,C60,C84 |
Chr8:14979035 |
AC |
A |
1bp_deletion | frameshift_variant | 6 | B109,B11,B41,B65,C60,C84 |
Chr8:14979045 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B109,B41,C84 |
Chr8:14979057 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B109,B41,C84 |
Chr8:14979064 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B109,B41,C84 |
Chr8:14979069 |
TA |
T |
1bp_deletion | frameshift_variant | 2 | B109,C84 |
Chr8:14979069 |
TA |
T |
1bp_deletion | CDS_variant | 2 | B109,C84 |
Chr8:14979072 |
GGA |
G |
2bp_deletion | frameshift_variant | 2 | B109,C84 |
Chr8:14979072 |
GGA |
G |
2bp_deletion | CDS_variant | 2 | B109,C84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057783664.1PF02458
Transferase 31-411 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783664.1 |
Pfam | PF02458 |
Transferase | Family | 31 | 411 | 4.5e-30 | 105.4 | Transferase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。