当前解析结果
SmilChr08G001800| 统一新 Gene ID | SmilChr08G001800 |
|---|---|
| 名称 | SmilChr08G001800 |
| 描述 | uncharacterized SmilChr08G001800 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 15174106 - 15178057 / + |
| NCBI Gene ID | LOC131001343 |
|---|---|
| GeneID | 131001343 |
| locus_tag | - |
| NCBI Name | LOC131001343 |
| 原始查询 | SmilChr08G001800 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000]; symbol=AT1G31150; hit=AT1G31150; species=arabidopsis; confidence=weak |
| 产物 | K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000]; symbol=AT1G31150; hit=AT1G31150; species=arabidopsis; confidence=weak |
| Arabidopsis | AT1G31150 (AT1G31150)K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000] identity=24.4; qcov=0.301; evalue=5.03e-11; confidence=weak |
| Rice | -- |
| GO | GO:0006508 (proteolysis); GO:0008234 (cysteine-type peptidase activity) |
| KEGG | - |
| Pfam | PF02902 (Peptidase_C48); PF09331 (DUF1985) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001343 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057783693.1 |
| 2 | Chromosome | 染色体 | 0.20000 | XP_057783693.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057783693.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057783693.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057783693.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:15174614 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr8:15174618 |
GA |
G |
1bp_deletion | frameshift_variant | 3 | B119,C31,D8 |
Chr8:15174618 |
GA |
G |
1bp_deletion | CDS_variant | 3 | B119,C31,D8 |
Chr8:15174630 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B134,B4,B54 |
Chr8:15174643 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,C61 |
Chr8:15174650 |
C |
CA |
1bp_insertion | frameshift_variant | 2 | C48,D8 |
Chr8:15174650 |
C |
CA |
1bp_insertion | CDS_variant | 2 | C48,D8 |
Chr8:15174652 |
T |
TA |
1bp_insertion | frameshift_variant | 17 | B127,B132,B61,B64,B65,C24,C27,C59,C61,C65,C66,C70,C8,C81,C87,D1,D2 |
Chr8:15174663 |
C |
CA |
1bp_insertion | frameshift_variant | 37 | A11,A18,A3,B105,B109,B110,B114,B117,B118,B123,B128,B136,B2,B21,B26,B35,B48,B49,B62,B76,B79,B85,B91,C1,C14,C36,C40,C43,C55,C63,C66,C8,C82,C9,D2,D6,D9 |
Chr8:15174671 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr8:15174676 |
G |
GA |
1bp_insertion | frameshift_variant | 4 | B33,B83,C10,C22 |
Chr8:15174676 |
G |
GA |
1bp_insertion | CDS_variant | 4 | B33,B83,C10,C22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783693.1PF09331
DUF1985 156-275 aa
PF02902
Peptidase_C48 688-906 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783693.1 |
Pfam | PF09331 |
DUF1985 | Family | 156 | 275 | 5.7e-12 | 46.5 | Domain of unknown function (DUF1985) |
XP_057783693.1 |
Pfam | PF02902 |
Peptidase_C48 | Domain | 688 | 906 | 2.2e-07 | 31.6 | Ulp1 protease family, C-terminal catalytic domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。