当前解析结果
SmilChr08G001809| 统一新 Gene ID | SmilChr08G001809 |
|---|---|
| 名称 | SmilChr08G001809 |
| 描述 | auxin-induced protein PCNT115-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 15278118 - 15281149 / + |
| NCBI Gene ID | LOC131001360 |
|---|---|
| GeneID | 131001360 |
| locus_tag | - |
| NCBI Name | LOC131001360 |
| 原始查询 | SmilChr08G001809 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | auxin-induced protein PCNT115-like |
| 产物 | auxin-induced protein PCNT115-like |
| Arabidopsis | AT1G60710 (ATB2)NAD(P)-linked oxidoreductase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842365] identity=62.8; qcov=1.09; evalue=3.84e-147; confidence=high |
| Rice | Os04g0338000- identity=61; qcov=1.1; evalue=1.81e-146; confidence=high |
| GO | GO:0004033 (GO:0004033); GO:0005737 (cytoplasm) |
| KEGG | - |
| Pfam | PF00248 (Aldo_ket_red) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001360 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057783713.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057783714.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057783713.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057783713.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057783713.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:15278444 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr8:15278454 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr8:15278455 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr8:15278496 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:15278534 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,C14 |
Chr8:15278550 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:15278562 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr8:15278682 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,C77 |
Chr8:15278765 |
GTC |
G |
2bp_deletion | frameshift_variant | 31 | A1,A11,A14,A19,A24,A25,A3,B122,B14,B15,B2,B21,B36,B55,B58,B59,B6,B7,B81,B98,C12,C23,C27,C28,C31,C43,C45,C5,C73,D10,D5 |
Chr8:15278815 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr8:15280270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B12,B66,B77,B8,C14 |
Chr8:15280301 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B8,B9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057783713.1PF00248
Aldo_ket_red 19-310 aa
XP_057783714.1PF00248
Aldo_ket_red 19-109 aa
PF00248
Aldo_ket_red 110-282 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783713.1 |
Pfam | PF00248 |
Aldo_ket_red | Domain | 19 | 310 | 1.1e-73 | 248.6 | Aldo/keto reductase family |
XP_057783714.1 |
Pfam | PF00248 |
Aldo_ket_red | Domain | 19 | 109 | 5.9e-56 | 190.4 | Aldo/keto reductase family |
XP_057783714.1 |
Pfam | PF00248 |
Aldo_ket_red | Domain | 110 | 282 | 5.9e-56 | 190.4 | Aldo/keto reductase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。