Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001831`

染色体: Chr08 坐标: 15686069-15690430 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001831`
名称	SmilChr08G001831
描述	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	15686069 - 15690430 / `-`

ID 对照

NCBI Gene ID	`LOC131001355`
GeneID	`131001355`
locus_tag	`-`
NCBI Name	`LOC131001355`
原始查询	`SmilChr08G001831`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1-like
产物	2%2C3-bisphosphoglycerate-dependent phosphoglycerate mutase 1-like
Arabidopsis	`AT1G22170` (AT1G22170) Phosphoglycerate mutase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838822] identity=70.3; qcov=0.988; evalue=6.69e-177; confidence=high
Rice	`Os02g0751800` - identity=74.7; qcov=0.911; evalue=1.05e-174; confidence=high
GO	GO:0006096 (glycolytic process); GO:0016868 (intramolecular phosphotransferase activity)
KEGG	smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00300 (His_Phos_1)
InterPro	-
eggNOG	-
NR	GeneID:131001355

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057783706.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057783706.1`
3	Nucleus	细胞核	0.00000	`XP_057783706.1`
4	Chromosome	染色体	0.00000	`XP_057783706.1`
5	Centromere	着丝粒	0.00000	`XP_057783706.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:15687691`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B53,C8
`Chr8:15687873`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C12,C27,D6
`Chr8:15688080`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,C59
`Chr8:15688093`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B3
`Chr8:15688247`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:15688673`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr8:15688701`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr8:15688966`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr8:15688984`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr8:15689009`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C83
`Chr8:15689009`	`TG`	`T`	1bp_deletion	CDS_variant	1	C83
`Chr8:15689079`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783706.1

347 aa

174

347

His_Phos_1

PF00300 His_Phos_1 96-172 aa PF00300 His_Phos_1 184-300 aa

XP_057783707.1

347 aa

174

347

His_Phos_1

PF00300 His_Phos_1 96-172 aa PF00300 His_Phos_1 184-300 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783706.1`	Pfam	`PF00300`	His_Phos_1	Domain	96	172	1.4e-35	123.5	Histidine phosphatase superfamily (branch 1)
`XP_057783706.1`	Pfam	`PF00300`	His_Phos_1	Domain	184	300	1.4e-35	123.5	Histidine phosphatase superfamily (branch 1)
`XP_057783707.1`	Pfam	`PF00300`	His_Phos_1	Domain	96	172	1.4e-35	123.5	Histidine phosphatase superfamily (branch 1)
`XP_057783707.1`	Pfam	`PF00300`	His_Phos_1	Domain	184	300	1.4e-35	123.5	Histidine phosphatase superfamily (branch 1)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927724.1
ACTTGAAAAAAGAATGAAAAGCAATATAAATGCGCGAAGAAACACACAACACACAGTAGGAGTTGCGAAATAGAGCCGTGAGAGTGAGAGACGCCACACGCCCCCTTATTTCCTGTCCATTTGCAGCACCAAATCGCCAGCTTCAAACAATACAAATTAGAGAGGGGCCACTTTCCCCAGTTCTTGAATTTGCCCCTTCCCTCCCTCACCAACCCTTCAATTTGTACGCTAAATTACAACTCACCATCTACAGCAACAAT...

XM_057927723.1
TTTCGTCCTTATATAAATGTAAGATCTCTCTCCGTTTCTCTATTCTAATCTTGCATTTGCCTAATTGTTCTCTTGATTTTTATTGTCTCCTGTCTTTTAAGAATGGCCTCCACAGCATATCACCAAGCAGTTGTGACTCTTCAATCTCGCGGTTACTTCAGTGACTCTTGCCTCAATCAGGAGAATGGAATCGCTTCATTTAGGTTGATTTCAAAAGGTGTCAAGCTAGATATTGCTTTGACAAGAAGAGAAACTTATTG...

CDS

2 records

下载 CDS FASTA

LOC131001355
ATGGCCTCCACAGCATATCACCAAGCAGTTGTGACTCTTCAATCTCGCGGTTACTTCAGTGACTCTTGCCTCAATCAGGAGAATGGAATCGCTTCATTTAGGTTGATTTCAAAAGGTGTCAAGCTAGATATTGCTTTGACAAGAAGAGAAACTTATTGCTCTAGGAGGCGAAGTGTCCCTGTGACTCAGGCATCGGCCTCACACACCACTGCGGTCCCTGACCCAGTTTTGTCTCCATCAAGCGGCACCTCAAGTGACTC...

Protein

2 records

下载 Protein FASTA

XP_057783706.1
MASTAYHQAVVTLQSRGYFSDSCLNQENGIASFRLISKGVKLDIALTRRETYCSRRRSVPVTQASASHTTAVPDPVLSPSSGTSSDSKKKSNEAALILIRHGESMWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVDMIYTSSLIRAQMTAMLAMTEHRRKKVPIILHDENEQARAWSQIFSEDTKKQCIPVVTAWQLNERMYGELQGLNKQETADRYGTEQVHVWRRSYDTPPPNGESLEMCAERAVAYFTEFIQ...

XP_057783707.1
MASTAYHQAVVTLQSRGYFSDSCLNQENGIASFRLISKGVKLDIALTRRETYCSRRRSVPVTQASASHTTAVPDPVLSPSSGTSSDSKKKSNEAALILIRHGESMWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVDMIYTSSLIRAQMTAMLAMTEHRRKKVPIILHDENEQARAWSQIFSEDTKKQCIPVVTAWQLNERMYGELQGLNKQETADRYGTEQVHVWRRSYDTPPPNGESLEMCAERAVAYFTEFIQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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