当前解析结果
SmilChr08G001832| 统一新 Gene ID | SmilChr08G001832 |
|---|---|
| 名称 | SmilChr08G001832 |
| 描述 | probable glucan 1,3-beta-glucosidase A |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 15703012 - 15708396 / + |
| NCBI Gene ID | LOC131001352 |
|---|---|
| GeneID | 131001352 |
| locus_tag | - |
| NCBI Name | LOC131001352 |
| 原始查询 | SmilChr08G001832 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable glucan 1,3-beta-glucosidase A |
| 产物 | probable glucan 1%2C3-beta-glucosidase A |
| Arabidopsis | -- |
| Rice | Os10g0370500 (OJ1208D02.5)- identity=63.8; qcov=0.982; evalue=0; confidence=high |
| GO | GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005737 (cytoplasm); GO:0007163 (establishment or maintenance of cell polarity); GO:0015629 (actin cytoskeleton); GO:0016477 (cell migration); GO:0051015 (actin filament binding); GO:0051017 (actin filament bundle assembly); GO:0071704 (GO:0071704) |
| KEGG | - |
| Pfam | PF00150 (Cellulase); PF25490 (DUF7910) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001352 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057783703.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057783703.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057783703.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057783703.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057783703.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:15703700 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,C72 |
Chr8:15703702 |
T |
TA |
1bp_insertion | frameshift_variant | 2 | B114,C72 |
Chr8:15703702 |
T |
TA |
1bp_insertion | CDS_variant | 2 | B114,C72 |
Chr8:15703804 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr8:15707092 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B132 |
Chr8:15707092 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B132 |
Chr8:15707445 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr8:15707757 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B135,C33 |
Chr8:15707848 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr8:15708085 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B74,C2 |
Chr8:15708120 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A10,A7,B135,B40,C33 |
Chr8:15708136 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B125,B140,C21,C36,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057783703.1PF25490
DUF7910 57-196 aa
PF00150
Cellulase 219-488 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783703.1 |
Pfam | PF25490 |
DUF7910 | Domain | 57 | 196 | 6.2e-59 | 198.8 | Domain of unknown function (DUF7910) |
XP_057783703.1 |
Pfam | PF00150 |
Cellulase | Domain | 219 | 488 | 3e-23 | 83.4 | Cellulase (glycosyl hydrolase family 5) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。