当前解析结果
SmilChr08G001835| 统一新 Gene ID | SmilChr08G001835 |
|---|---|
| 名称 | SmilChr08G001835 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 15727818 - 15730592 / - |
| NCBI Gene ID | LOC131001377 |
|---|---|
| GeneID | 131001377 |
| locus_tag | - |
| NCBI Name | LOC131001377 |
| 原始查询 | SmilChr08G001835 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=29.6; qcov=0.697; evalue=9.41e-89; confidence=low |
| Rice | Os06g0166100- identity=33.7; qcov=0.742; evalue=4.91e-115; confidence=low |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF03101 (FAR1); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001377 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057783728.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057783728.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057783728.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057783728.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057783728.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:15728434 |
GCC |
G |
2bp_deletion | frameshift_variant | 1 | B44 |
Chr8:15728434 |
GCC |
G |
2bp_deletion | CDS_variant | 1 | B44 |
Chr8:15728440 |
G |
GA |
1bp_insertion | frameshift_variant | 26 | A19,B103,B106,B108,B110,B112,B117,B121,B135,B136,B25,B37,B44,B48,B49,B59,B66,B75,B82,B83,B90,C19,C50,C52,C65,C80 |
Chr8:15728461 |
AT |
A |
1bp_deletion | frameshift_variant | 5 | B112,B83,B93,C52,C80 |
Chr8:15728461 |
AT |
A |
1bp_deletion | CDS_variant | 5 | B112,B83,B93,C52,C80 |
Chr8:15728473 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B112,B83,B93,C52,C80 |
Chr8:15728550 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr8:15728564 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B102,B67,B83,C79 |
Chr8:15728600 |
T |
TC |
1bp_insertion | frameshift_variant | 8 | B117,B16,B44,B7,B75,B89,C54,D4 |
Chr8:15728639 |
TC |
T |
1bp_deletion | frameshift_variant | 9 | A21,A3,A8,B137,B39,B67,B83,B93,C79 |
Chr8:15728649 |
CGA |
C |
2bp_deletion | frameshift_variant | 3 | B108,B66,B88 |
Chr8:15728649 |
CGA |
C |
2bp_deletion | CDS_variant | 3 | B108,B66,B88 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783728.1PF03101
FAR1 94-183 aa
PF21056
ZSWIM1-3_RNaseH-like 279-389 aa
PF10551
MULE 307-401 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783728.1 |
Pfam | PF03101 |
FAR1 | Domain | 94 | 183 | 4.5e-18 | 66.5 | FAR1 DNA-binding domain |
XP_057783728.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 279 | 389 | 6.7e-07 | 30.0 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057783728.1 |
Pfam | PF10551 |
MULE | Domain | 307 | 401 | 2.9e-28 | 98.8 | MULE transposase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。