Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001846`

染色体: Chr08 坐标: 15834196-15836970 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001846`
名称	SmilChr08G001846
描述	uncharacterized SmilChr08G001846
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	15834196 - 15836970 / `-`

ID 对照

NCBI Gene ID	`LOC131001389`
GeneID	`131001389`
locus_tag	`-`
NCBI Name	`LOC131001389`
原始查询	`SmilChr08G001846`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os03g0195200; species=rice; confidence=high
产物	hit=Os03g0195200; species=rice; confidence=high
Arabidopsis	`AT5G10070` (AT5G10070) RNase L inhibitor protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830871] identity=68.9; qcov=0.855; evalue=8.17e-114; confidence=high
Rice	`Os03g0195200` - identity=67.7; qcov=0.865; evalue=2.95e-116; confidence=high
GO	GO:0030490 (maturation of SSU-rRNA); GO:0106388 (rRNA small subunit aminocarboxypropyltransferase activity)
KEGG	-
Pfam	PF04034 (Ribo_biogen_C); PF04068 (Fer4_RLI)
InterPro	-
eggNOG	-
NR	GeneID:131001389

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783751.1`
2	Nucleolus	核仁	0.60000	`XP_057783751.1`
3	Nucleoplasm	核质	0.20000	`XP_057783751.1`
4	Cytoplasm	细胞质	0.20000	`XP_057783751.1`
5	Chromosome	染色体	0.00000	`XP_057783751.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:15834580`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A2,B40
`Chr8:15834782`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B2,B25
`Chr8:15834828`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr8:15836552`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr8:15836676`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C81
`Chr8:15836676`	`AC`	`A`	1bp_deletion	CDS_variant	1	C81
`Chr8:15836679`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783751.1

276 aa

138

276

Fer4_RLI

Ribo_biogen_C

PF04068 Fer4_RLI 56-87 aa PF04034 Ribo_biogen_C 93-219 aa

XP_057783752.1

275 aa

138

275

Fer4_RLI

Ribo_biogen_C

PF04068 Fer4_RLI 55-86 aa PF04034 Ribo_biogen_C 92-218 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783751.1`	Pfam	`PF04068`	Fer4_RLI	Family	56	87	2e-14	53.7	Possible Fer4-like domain in RNase L inhibitor, RLI
`XP_057783751.1`	Pfam	`PF04034`	Ribo_biogen_C	Domain	93	219	5.6e-52	175.5	Ribosome biogenesis protein, C-terminal
`XP_057783752.1`	Pfam	`PF04068`	Fer4_RLI	Family	55	86	2e-14	53.7	Possible Fer4-like domain in RNase L inhibitor, RLI
`XP_057783752.1`	Pfam	`PF04034`	Ribo_biogen_C	Domain	92	218	5.6e-52	175.5	Ribosome biogenesis protein, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927769.1
AGTAATATTTTAAAAACTAAATGATTTTTCTTTTTTTTGGGACTTATTAGGGTCAGATTGATATCCCTAAAGCTAACAAATCTTATTTTCAATTATTCTTTTCGAACACTCAAAGATTGTAGTAGTATCTTTTTTTCCTAAAAAGAAGAAAAGAAAAAAGATTGTAGTTTTATCGTATCCCCAAATTTAGAGCTGCTAAAGCCGAGCGATCCCAACAACGACGAACATGGGTCCTAACAAGCAGCAGAAACAGCGGCGAT...

XM_057927768.1
AGTAATATTTTAAAAACTAAATGATTTTTCTTTTTTTTGGGACTTATTAGGGTCAGATTGATATCCCTAAAGCTAACAAATCTTATTTTCAATTATTCTTTTCGAACACTCAAAGATTGTAGTAGTATCTTTTTTTCCTAAAAAGAAGAAAAGAAAAAAGATTGTAGTTTTATCGTATCCCCAAATTTAGAGCTGCTAAAGCCGAGCGATCCCAACAACGACGAACATGGGTCCTAACAAGCAGCAGAAACAGCGGCGAT...

CDS

2 records

下载 CDS FASTA

LOC131001389
ATGGGTCCTAACAAGCAGCAGAAACAGCGGCGATTCAAGAAAGACAACCACCGCCAACACGCCCACGGTCCGTCTCATCAGCTCGACAGGGATGCAGATGATGGGTCTTTGCCGACTGATCCAGCAGCTGAAGAGGAACAGGAGCAAAAAGTTCCTGCCATTCAGCTCGCCATGTGGGATTTTGGGCAGTGCGATGCAAAGAGGTGCACTGGACGCAAGCTTGCAAGATTTGGATTTTTGAAAGAAATGCGGGTTGGTAC...

LOC131001389
ATGGGTCCTAACAAGCAGCAGAAACAGCGGCGATTCAAGAAAGACAACCACCGCCAACACGCCCACGGTCCGTCTCATCAGCTCGACAGGGATGCAGATGATGGGTCTTTGCCGACTGATCCAGCAGCAGCTGAAGAGGAACAGGAGCAAAAAGTTCCTGCCATTCAGCTCGCCATGTGGGATTTTGGGCAGTGCGATGCAAAGAGGTGCACTGGACGCAAGCTTGCAAGATTTGGATTTTTGAAAGAAATGCGGGTTGG...

Protein

2 records

下载 Protein FASTA

XP_057783751.1
MGPNKQQKQRRFKKDNHRQHAHGPSHQLDRDADDGSLPTDPAAAEEEQEQKVPAIQLAMWDFGQCDAKRCTGRKLARFGFLKEMRVGTGFGGIALSPVGTQCVSQEDLELIKRRGLAVVDCSWARLNDVPFTKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEEETGNLLLSKFKWGHAFLSLNRELLKAYSECKNGADMIAVQNDWLSQQNSRPSDEHLTKGQGERSGSNKDEDGSSSGSEDGLPPLE...

XP_057783752.1
MGPNKQQKQRRFKKDNHRQHAHGPSHQLDRDADDGSLPTDPAAEEEQEQKVPAIQLAMWDFGQCDAKRCTGRKLARFGFLKEMRVGTGFGGIALSPVGTQCVSQEDLELIKRRGLAVVDCSWARLNDVPFTKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEEETGNLLLSKFKWGHAFLSLNRELLKAYSECKNGADMIAVQNDWLSQQNSRPSDEHLTKGQGERSGSNKDEDGSSSGSEDGLPPLER...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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