Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G001860

染色体: Chr08 坐标: 15973451-15976484 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G001860
名称SmilChr08G001860
描述2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向15973451 - 15976484 / +

ID 对照

NCBI Gene IDLOC131001402
GeneID131001402
locus_tag-
NCBI NameLOC131001402
原始查询SmilChr08G001860

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1-like
产物2%2C3-bisphosphoglycerate-dependent phosphoglycerate mutase 1-like
ArabidopsisAT1G22170 (AT1G22170)
Phosphoglycerate mutase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838822]
identity=74.2; qcov=0.972; evalue=3.29e-141; confidence=high
RiceOs02g0751800
-
identity=76.2; qcov=0.972; evalue=9.5e-142; confidence=high
GOGO:0006096 (glycolytic process); GO:0016868 (intramolecular phosphotransferase activity)
KEGGsmil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
PfamPF00300 (His_Phos_1)
InterPro-
eggNOG-
NRGeneID:131001402

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057783767.1
2 Cytosol 细胞质基质 1.00000 XP_057783770.1
3 Chloroplast stroma 叶绿体基质 0.80000 XP_057783767.1
4 Cytoplasm 细胞质 0.80000 XP_057783770.1
5 Nucleus 细胞核 0.00000 XP_057783767.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:15974089 G A EMS_canonical_SNV CDS_variant 5 A5,B47,B80,B83,B98
Chr8:15974660 C T EMS_canonical_SNV CDS_variant 4 B117,B74,C2,C40
Chr8:15975164 C T EMS_canonical_SNV CDS_variant 1 B53

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783767.1
349 aa
N
1
174
349
His_Phos_1
His_Phos_1
C
PF00300 His_Phos_1 96-172 aa PF00300 His_Phos_1 192-302 aa
XP_057783769.1
349 aa
N
1
174
349
His_Phos_1
His_Phos_1
C
PF00300 His_Phos_1 96-172 aa PF00300 His_Phos_1 192-302 aa
XP_057783770.1
251 aa
N
1
126
251
His_Phos_1
His_Phos_1
C
PF00300 His_Phos_1 1-75 aa PF00300 His_Phos_1 94-204 aa
XP_057783771.1
251 aa
N
1
126
251
His_Phos_1
His_Phos_1
C
PF00300 His_Phos_1 1-75 aa PF00300 His_Phos_1 94-204 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057783767.1 Pfam PF00300 His_Phos_1 Domain 96 172 7e-34 117.9 Histidine phosphatase superfamily (branch 1)
XP_057783767.1 Pfam PF00300 His_Phos_1 Domain 192 302 7e-34 117.9 Histidine phosphatase superfamily (branch 1)
XP_057783769.1 Pfam PF00300 His_Phos_1 Domain 96 172 7e-34 117.9 Histidine phosphatase superfamily (branch 1)
XP_057783769.1 Pfam PF00300 His_Phos_1 Domain 192 302 7e-34 117.9 Histidine phosphatase superfamily (branch 1)
XP_057783770.1 Pfam PF00300 His_Phos_1 Domain 1 75 9.4e-33 114.3 Histidine phosphatase superfamily (branch 1)
XP_057783770.1 Pfam PF00300 His_Phos_1 Domain 94 204 9.4e-33 114.3 Histidine phosphatase superfamily (branch 1)
XP_057783771.1 Pfam PF00300 His_Phos_1 Domain 1 75 9.4e-33 114.3 Histidine phosphatase superfamily (branch 1)
XP_057783771.1 Pfam PF00300 His_Phos_1 Domain 94 204 9.4e-33 114.3 Histidine phosphatase superfamily (branch 1)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057927784.1
GAAAAAGCCTTCATTAAAGCCCATAAACAAATTGCCGGCGAAGCCCATTTCAACACAGTAACCCGCCAAAATCAATAAATTAGACGACACGTCCCAACAACCACCGGCCGGCCGCCGATTTCCGCCGCCGAAGCTCCGACGATCTTTATTTCAAGGGCTTTAAATTTCAAGAATGACTGCTGTTGCTGCTAGTGCTCTTTATCAATCTTTCTGCTCAAAATGTATAGTTAGAGAGGGTTGCCATTCTCATTCTTGTAAGA...
XM_057927787.1
AAAGCCTTCATTAAAGCCCATAAACAAATTGCCGGCGAAGCCCATTTCAACACAGTAACCCGCCAAAATCAATAAATTAGACGACACGTCCCAACAACCACCGGCCGGCCGCCGATTTCCGCCGCCGAAGCTCCGACGATCTTTATTTCAAATGAGTCTGTTTTGATATTGATGCGGCATGGAGAGTCAATGTGGAACGAGAAGAATCTTTTCACTGGTTGTGTGGATGTGCCCTTGACGAGTAGAGGAGTGGAAGAAGC...

CDS

4 records

下载 CDS FASTA
LOC131001402
ATGACTGCTGTTGCTGCTAGTGCTCTTTATCAATCTTTCTGCTCAAAATGTATAGTTAGAGAGGGTTGCCATTCTCATTCTTGTAAGAGATTTCAAGAATTGTCCATTAGATCACCTCAAGTTGGTTTTTGGGGCGATAACAAGGGCTATGTAGGAAAAAGAAACAGCTATAGACTATCTAGATTGCATTTTTTCTGTTCATCAAAGCGGCTGCATCCAGTTTCTTCCGTTTCCTCTACCAAGAGCCATTCTTATAGTTC...
LOC131001402
ATGACTGCTGTTGCTGCTAGTGCTCTTTATCAATCTTTCTGCTCAAAATGTATAGTTAGAGAGGGTTGCCATTCTCATTCTTGTAAGAGATTTCAAGAATTGTCCATTAGATCACCTCAAGTTGGTTTTTGGGGCGATAACAAGGGCTATGTAGGAAAAAGAAACAGCTATAGACTATCTAGATTGCATTTTTTCTGTTCATCAAAGCGGCTGCATCCAGTTTCTTCCGTTTCCTCTACCAAGAGCCATTCTTATAGTTC...

Protein

4 records

下载 Protein FASTA
XP_057783767.1
MTAVAASALYQSFCSKCIVREGCHSHSCKRFQELSIRSPQVGFWGDNKGYVGKRNSYRLSRLHFFCSSKRLHPVSSVSSTKSHSYSSQTAENESVLILMRHGESMWNEKNLFTGCVDVPLTSRGVEEAIEAGKRISNFPLDIIYTSALIRAQMTTMLALTQHHCMKVPIIMHHDETEQARTWTQIYSEDTKKQSIPVIKAWQLNERMYGELQGFNKQETAELYGKEQVYNWRRSYHVQPPNGESLEMCLGRAVAFFKEHI...
XP_057783769.1
MTAVAASALYQSFCSKCIVREGCHSHSCKRFQELSIRSPQVGFWGDNKGYVGKRNSYRLSRLHFFCSSKRLHPVSSVSSTKSHSYSSQTAENESVLILMRHGESMWNEKNLFTGCVDVPLTSRGVEEAIEAGKRISNFPLDIIYTSALIRAQMTTMLALTQHHCMKVPIIMHHDETEQARTWTQIYSEDTKKQSIPVIKAWQLNERMYGELQGFNKQETAELYGKEQVYNWRRSYHVQPPNGESLEMCLGRAVAFFKEHI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器